Data Mining in Bioinformatics 2005

Jason Tsong-Li Wang, Mohammed Javeed Zaki, Hannu Toivonen, Dennis Shasha (Eds.): Data Mining in Bioinformatics. Springer 2005, ISBN 1-85233-671-4

Home Page of this book

Part I: Overview

• Jason Tsong-Li Wang, Mohammed Javeed Zaki, Hannu Toivonen, Dennis Shasha: Introduction to Data Mining in Bioinformatics. 3-8
• Peter Bajcsy, Jiawei Han, Lei Liu, Jiong Yang: Survey of Biodata Analysis from a Data Mining Perspective. 9-39

Part II: Sequence and Structure Alignment

• Cinzia Di Pietro, Alfredo Ferro, Giuseppe Pigola, Alfredo Pulvirenti, Michele Purrello, Marco Ragusa, Dennis Shasha: AntiClustAl: Multiple Sequence Alignment by Antipole Clustering. 43-57
• Kaizhong Zhang: RNA Structure Comparison and Alignment. 59-81

Part III: Biological Data Mining

• Marko Salmenkivi, Heikki Mannila: Piecewise Constant Modeling of Sequential Data Using Reversible Jump Markov Chain Monte Carlo. 85-103
• Petteri Sevon, Hannu Toivonen, Paivi Onkamo: Gene Mapping by Pattern Discovery. 105-126
• Mohammed Javeed Zaki, Vinay Nadimpally, Deb Bardhan, Chris Bystroff: Predicting Protein Folding Pathways. 127-141
• Kai Huang, Robert F. Murphy: Data Mining Methods for a Systematics of Protein Subcellular Location. 143-187
• Mukund Deshpande, Michihiro Kuramochi, George Karypis: Mining Chemical Compounds. 189-215

Part IV: Biological Data Management

• Roderic D. M. Page: Phyloinformatics: Toward a Phylogenetic Database. 219-241
• Jignesh M. Patel, Donald P. Huddler, Laurie Hammel: Declarative and Efficient Querying on Protein Secondary Structures. 243-273
• Ambuj K. Singh: Scalable Index Structures for Biological Data. 275-296