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DBLP keys2009
46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLErnst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218
45Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOle Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger: Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments. BioData Mining 2: (2009)
44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert: A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics 25(9): 1118-1124 (2009)
2008
43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert: Segment-based multiple sequence alignment. ECCB 2008: 187-192
42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron: Fast and Adaptive Variable Order Markov Chain Construction. WABI 2008: 306-317
41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOle Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert: LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. BMC Bioinformatics 9: (2008)
40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher: OpenMS - An open-source software framework for mass spectrometry. BMC Bioinformatics 9: (2008)
39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTobias Rausch, Anne-Katrin Emde, Knut Reinert: Robust consensus computation. BMC Bioinformatics 9(S-10): (2008)
38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Döring, David Weese, Tobias Rausch, Knut Reinert: SeqAn An efficient, generic C++ library for sequence analysis. BMC Bioinformatics 9: (2008)
37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOle Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert: Computational Quantification of Peptides from LC-MS Data. Journal of Computational Biology 15(7): 685-704 (2008)
2007
36no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKnut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29
35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert: A geometric approach for the alignment of liquid chromatography - mass spectrometry data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 273-281
34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOle Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert: A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB 2007: 473-487
33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarkus Bauer, Gunnar W. Klau, Knut Reinert: Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics 8: (2007)
32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm: TOPP - the OpenMS proteomics pipeline. Bioinformatics 23(2): 191-197 (2007)
31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007)
2006
30no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian G. Huber, Oliver Kohlbacher, Knut Reinert: Computational Proteomics, 20.-25. November 2005 Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006
29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt: High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254
28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLErnst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: A branch-and-cut algorithm for multiple sequence alignment. Math. Program. 105(2-3): 387-425 (2006)
2005
27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein: Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. CompLife 2005: 151-162
26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarkus Bauer, Gunnar W. Klau, Knut Reinert: Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. CompLife 2005: 217-228
25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Abstract Collection - Computational Proteomics. Computational Proteomics 2005
24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChristian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Executive Summary - Computational Proteomics. Computational Proteomics 2005
23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber: Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. Computational Proteomics 2005
22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarkus Bauer, Gunnar W. Klau, Knut Reinert: Multiple Structural RNA Alignment with Lagrangian Relaxation. WABI 2005: 303-314
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLWitold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert: Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants. BMC Bioinformatics 6: 203 (2005)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLWitold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6: 285 (2005)
2004
19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOliver Kohlbacher, Knut Reinert: Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). it - Information Technology 46(1): 31-38 (2004)
2002
17no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLErnst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. ECCB 2002: 4-16
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAaron L. Halpern, Daniel H. Huson, Knut Reinert: Segment Match Refinement and Applications. WABI 2002: 126-139
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002)
2001
14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRussell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18
13no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306
2000
10no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKnut Reinert, Jens Stoye, Torsten Will: An iterative method for faster sum-of-pairs multiple sequence alignment. Bioinformatics 16(9): 808-814 (2000)
9no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJohn D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron: A polyhedral approach to sequence alignment problems. Discrete Applied Mathematics 104(1-3): 143-186 (2000)
8no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMartin Lermen, Knut Reinert: The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment. Journal of Computational Biology 7(5): 655-671 (2000)
1999
7no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKnut Reinert, Jens Stoye, Torsten Will: Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. German Conference on Bioinformatics 1999: 17-24
6no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
1998
5no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKnut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHans-Peter Lenhof, Knut Reinert, Martin Vingron: A polyhedral approach to RNA sequence structure alignment. RECOMB 1998: 153-162
3no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHans-Peter Lenhof, Knut Reinert, Martin Vingron: A Polyhedral Approach to RNA Sequence Structure Alignment. Journal of Computational Biology 5(3): 517-530 (1998)
1997
2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKnut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu: A branch-and-cut algorithm for multiple sequence alignment. RECOMB 1997: 241-250
1996
1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhillip G. Bradford, Knut Reinert: Lower Bounds for Row Minima Searching (Extended Abstract). ICALP 1996: 454-465

Coauthor Index

1Ernst Althaus [17] [28] [46]
2Markus Bauer [22] [26] [33] [36]
3Andreas Bertsch [40]
4Phillip G. Bradford [1]
5Alberto Caprara [17] [28]
6Kabir Chaturvedi [14]
7Arthur L. Delcher [13]
8Nathanaël Delmotte [23]
9Gennady Denisov [44]
10Ian M. Dew [13]
11Andreas Döring [36] [38] [42] [43] [44]
12Nathan Edwards [14]
13Anne-Katrin Emde [39] [43] [44]
14Daniel P. Fasulo [14]
15Michael Flanigan [13]
16Patrick Giavalisco [20]
17Johan Gobom [20]
18Clemens Gröpl [27] [29] [32] [34] [35] [37] [40] [41]
19Aaron L. Halpern [11] [13] [14] [16] [36]
20Ralf Herwig [20]
21Andreas Hildebrandt [29] [34] [37] [40]
22Christian G. Huber [23] [24] [25] [27] [30] [35] [37]
23Daniel H. Huson [11] [12] [13] [14] [15] [16]
24Rene Hussong [34] [37] [40]
25Sorin Istrail [14]
26Peter Jungblut [21]
27John D. Kececioglu [2] [9]
28Gunnar W. Klau [19] [22] [26] [31] [33] [36] [46]
29Christoph L. Klein [23] [27]
30Oliver Kohlbacher [14] [18] [23] [24] [25] [27] [29] [30] [32] [40] [41] [46]
31Sergey Koren [44]
32Saul A. Kravitz [13]
33Zhongwu Lai [11] [13]
34Maciej Lalowski [20] [21]
35Eva Lange [27] [29] [32] [35] [40]
36Hans Lehrach [20]
37Andreas Leinenbach [23] [35] [37]
38Hans-Peter Lenhof [2] [3] [4] [5] [6] [9] [17] [28] [46]
39Martin Lermen [8]
40Egidijus Machtejevas [45]
41Peter Martus [20]
42Bettina M. Mayr [23] [27]
43Kurt Mehlhorn [2] [9]
44Jason R. Miller [14]
45Clark M. Mobarry [13]
46Burkhard Morgenstern [5] [6]
47Petra Mutzel [2] [9]
48Eugene W. Myers (Gene Myers) [11] [12] [13] [15]
49Cédric Notredame [43]
50Nico Pfeifer [32] [40] [41]
51Sven Rahmann [19] [31]
52Tobias Rausch [38] [39] [42] [43] [44]
53Karin A. Remington [13] [14]
54Alexander Schliep [19] [31]
55Hartmut Schlüter [45]
56Marcel H. Schulz [42]
57Ole Schulz-Trieglaff [32] [34] [35] [37] [40] [41] [45]
58Russell Schwartz [14]
59Albert Sickmann [20]
60Jens Stoye [7] [10]
61Marc Sturm [27] [32] [40]
62Granger G. Sutton [11] [13]
63Joachim Thiemann [45]
64Russell J. Turner [14]
65Klaus Unger [45]
66Martin Vingron [3] [4] [9] [19] [31] [42]
67Brian Walenz [14]
68David Weese [38] [42] [43] [44]
69Torsten Will [7] [10]
70Witold E. Wolski [20] [21]
71Shibu Yooseph [14]
72Alexandra Zerck [40]

Colors in the list of coauthors

Copyright © Sun Mar 14 22:39:24 2010 by Michael Ley (ley@uni-trier.de)