4. DILS 2007: Philadelphia, PA, USA

Keynote Presentations

• Kenneth H. Buetow:
  Enabling the Molecular Medicine Revolution Through Network-Centric Biomedicine. 1-2
  
• Junhyong Kim:
  Phyl-O'Data (POD) from Tree of Life: Integration Challenges from Yellow Slimy Things to Black Crunchy Stuff. 3-5
  

New Architectures and Experience on Using Systems

• Luciano Barbosa, Sumit Tandon, Juliana Freire:
  Automatically Constructing a Directory of Molecular Biology Databases. 6-16
  
• Chinh Dang, Andrew Sodt, Christopher Lau, Brian Youngstrom, Lydia Ng, Leonard Kuan, Sayan D. Pathak, Allan Jones, Michael Hawrylycz:
  The Allen Brain Atlas: Delivering Neuroscience to the Web on a Genome Wide Scale. 17-26
  
• Jason Tsong-Li Wang, Dongrong Wen, Bruce A. Shapiro, Katherine G. Herbert, Jing Li, Kaushik Ghosh:
  Toward an Integrated RNA Motif Database. 27-36
  
• Can Türker, Etzard Stolte, Dieter Joho, Ralph Schlapbach:
  B-Fabric: A Data and Application Integration Framework for Life Sciences Research. 37-47
  
• Rami Rifaieh, Roger Unwin, Jeremy Carver, Mark A. Miller:
  SWAMI: Integrating Biological Databases and Analysis Tools Within User Friendly Environment. 48-58
  
• Steve Pettifer, Katy Wolstencroft, Pinar Alper, Teresa K. Attwood, Alain Coletta, Carole A. Goble, Peter Li, Philip McDermott, James Marsh, Tom Oinn, James Sinnott, David Thorne:
  ^myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences. 59-70
  

Managing and Designing Scientific Workflows

• Thodoros Topaloglou, Moyez Dharsee, Rob M. Ewing, Yury V. Bukhman:
  A High-Throughput Bioinformatics Platform for Mass Spectrometry-Based Proteomics. 71-88
  
• Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis:
  Bioinformatics Service Reconciliation by Heterogeneous Schema Transformation. 89-104
  
• Jan Hidders, Natalia Kwasnikowska, Jacek Sroka, Jerzy Tyszkiewicz, Jan Van den Bussche:
  A Formal Model of Dataflow Repositories. 105-121
  
• Shawn Bowers, Timothy M. McPhillips, Martin Wu, Bertram Ludäscher:
  Project Histories: Managing Data Provenance Across Collection-Oriented Scientific Workflow Runs. 122-138
  

Mapping and Matching Techniques

• Björn Egert, Steffen Neumann, Alexander Hinneburg:
  Fast Approximate Duplicate Detection for 2D-NMR Spectra. 139-155
  
• Alexey Tsymbal, Sonja Zillner, Martin Huber:
  Ontology - Supported Machine Learning and Decision Support in Biomedicine. 156-171
  
• Toralf Kirsten, Andreas Thor, Erhard Rahm:
  Instance-Based Matching of Large Life Science Ontologies. 172-187
  

Modeling of Life Science Data

• Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.:
  Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL). 188-203
  
• Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia:
  Inferring Gene Regulatory Networks from Multiple Data Sources Via a Dynamic Bayesian Network with Structural EM. 204-214
  
• Paolo Missier, Suzanne M. Embury, Cornelia Hedeler, R. Mark Greenwood, Joanne Pennock, Andy Brass:
  Accelerating Disease Gene Identification Through Integrated SNP Data Analysis. 215-230
  

Annotation in Data Integration

• Philipp Hussels, Silke Trißl, Ulf Leser:
  What's New? What's Certain? - Scoring Search Results in the Presence of Overlapping Data Sources. 231-246
  
• Woei-Jyh Lee, Louiqa Raschid, Padmini Srinivasan, Nigam Shah, Daniel L. Rubin, Natasha Fridman Noy:
  Using Annotations from Controlled Vocabularies to Find Meaningful Associations. 247-263
  
• Lawrence H. Reeve, Hyoil Han:
  CONANN: An Online Biomedical Concept Annotator. 264-279