 | 2010 |
|---|
| 80 |       | Sara C. Madeira,
Miguel C. Teixeira,
Isabel Sá-Correia,
Arlindo L. Oliveira:
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm.
IEEE/ACM Trans. Comput. Biology Bioinform. 7(1): 153-165 (2010) |
| 2009 |
|---|
| 79 | | Artur J. Ferreira,
Arlindo L. Oliveira,
Mário A. T. Figueiredo:
On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression.
DCC 2009: 444 |
| 78 | | Sara C. Madeira,
Arlindo L. Oliveira:
Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis.
IWANN (2) 2009: 1013-1019 |
| 77 | | Sara C. Madeira,
Arlindo L. Oliveira:
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series.
Algorithms for Molecular Biology 4: (2009) |
| 76 | | Artur J. Ferreira,
Arlindo L. Oliveira,
Mário A. T. Figueiredo:
On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression
CoRR abs/0903.4251: (2009) |
| 75 | | Artur J. Ferreira,
Arlindo L. Oliveira,
Mário A. T. Figueiredo:
Time and Memory Efficient Lempel-Ziv Compression Using Suffix Arrays
CoRR abs/0912.5449: (2009) |
| 74 | | Miguel M. F. Bugalho,
Arlindo L. Oliveira:
Constant Time Clash Detection in protein Folding.
J. Bioinformatics and Computational Biology 7(1): 55-74 (2009) |
| 2008 |
|---|
| 73 | | Miguel M. F. Bugalho,
Arlindo L. Oliveira:
An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures.
BSB 2008: 23-34 |
| 72 | | Ana Graça,
João Marques-Silva,
Inês Lynce,
Arlindo L. Oliveira:
Efficient Haplotype Inference with Combined CP and OR Techniques.
CPAIOR 2008: 308-312 |
| 71 | | Luís M. S. Russo,
Gonzalo Navarro,
Arlindo L. Oliveira:
Dynamic Fully-Compressed Suffix Trees.
CPM 2008: 191-203 |
| 70 | | Xiaoshu Wang,
Jonas S. Almeida,
Arlindo L. Oliveira:
Ontology Design Principles and Normalization Techniques in the Web.
DILS 2008: 28-43 |
| 69 | | Inês Lynce,
Ana Graça,
João Marques-Silva,
Arlindo L. Oliveira:
Haplotype Inference with Boolean Constraint Solving: An Overview.
ICTAI (1) 2008: 92-100 |
| 68 | | Alexandre P. Francisco,
Arlindo L. Oliveira,
Ana T. Freitas:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.
ISBRA 2008: 220-231 |
| 67 | | Luís M. S. Russo,
Gonzalo Navarro,
Arlindo L. Oliveira:
Fully-Compressed Suffix Trees.
LATIN 2008: 362-373 |
| 66 |  | Artur J. Ferreira,
Arlindo L. Oliveira,
Mário A. T. Figueiredo:
Suffix Arrays - A Competitive Choice for Fast Lempel-Ziv Compressions.
SIGMAP 2008: 5-12 |
| 65 | | Luís M. S. Russo,
Gonzalo Navarro,
Arlindo L. Oliveira:
Indexed Hierarchical Approximate String Matching.
SPIRE 2008: 144-154 |
| 64 | | Alexandre P. Francisco,
Ricardo A. Baeza-Yates,
Arlindo L. Oliveira:
Clique Analysis of Query Log Graphs.
SPIRE 2008: 188-199 |
| 63 | | André L. Martins,
Helena Sofia Pinto,
Arlindo L. Oliveira:
Using Grammatical Inference Techniques to Learn Ontologies that Describe the Structure of Domain Instances.
Applied Artificial Intelligence 22(1&2): 139-167 (2008) |
| 62 | | Ana C. Casimiro,
Susana Vinga,
Ana T. Freitas,
Arlindo L. Oliveira:
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
BMC Bioinformatics 9: (2008) |
| 61 | | Luís M. S. Russo,
Arlindo L. Oliveira:
A compressed self-index using a Ziv-Lempel dictionary.
Inf. Retr. 11(4): 359-388 (2008) |
| 60 | | Pedro T. Monteiro,
Nuno D. Mendes,
Miguel C. Teixeira,
Sofia d'Orey,
Sandra Tenreiro,
Nuno P. Mira,
Hélio Pais,
Alexandre P. Francisco,
Alexandra M. Carvalho,
Artur B. Lourenço,
Isabel Sá-Correia,
Arlindo L. Oliveira,
Ana T. Freitas:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.
Nucleic Acids Research 36(Database-Issue): 132-136 (2008) |
| 2007 |
|---|
| 59 | | Ana Graça,
João Marques-Silva,
Inês Lynce,
Arlindo L. Oliveira:
Efficient Haplotype Inference with Pseudo-boolean Optimization.
AB 2007: 125-139 |
| 58 | | Sara C. Madeira,
Arlindo L. Oliveira:
An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data.
APBC 2007: 67-80 |
| 57 | | Alexandra M. Carvalho,
Arlindo L. Oliveira,
Marie-France Sagot:
Efficient Learning of Bayesian Network Classifiers.
Australian Conference on Artificial Intelligence 2007: 16-25 |
| 56 | | João Marques-Silva,
Inês Lynce,
Ana Graça,
Arlindo L. Oliveira:
Efficient and Tight Upper Bounds for Haplotype Inference by Pure Parsimony Using Delayed Haplotype Selection.
EPIA Workshops 2007: 621-632 |
| 55 | | Alexandra M. Carvalho,
Arlindo L. Oliveira:
Learning bayesian networks consistent with the optimal branching.
ICMLA 2007: 369-374 |
| 54 | | Ana Cardoso-Cachopo,
Arlindo L. Oliveira:
Semi-supervised single-label text categorization using centroid-based classifiers.
SAC 2007: 844-851 |
| 53 | | Luís M. S. Russo,
Gonzalo Navarro,
Arlindo L. Oliveira:
Approximate String Matching with Lempel-Ziv Compressed Indexes.
SPIRE 2007: 264-275 |
| 52 | | Luís M. S. Russo,
Arlindo L. Oliveira:
Efficient generation of super condensed neighborhoods.
J. Discrete Algorithms 5(3): 501-513 (2007) |
| 2006 |
|---|
| 51 | | José M. Fernandes,
Marcelino B. Santos,
Arlindo L. Oliveira,
João Paulo Teixeira:
Probabilistic Testability Analysis and DFT Methods at RTL.
DDECS 2006: 216-217 |
| 50 | | Luís M. S. Russo,
Arlindo L. Oliveira:
A Compressed Self-index Using a Ziv-Lempel Dictionary.
SPIRE 2006: 163-180 |
| 49 | | Luís Pedro Coelho,
Arlindo L. Oliveira:
Dotted Suffix Trees A Structure for Approximate Text Indexing.
SPIRE 2006: 329-336 |
| 48 | | Nuno D. Mendes,
Ana C. Casimiro,
Pedro M. Santos,
Isabel Sá-Correia,
Arlindo L. Oliveira,
Ana T. Freitas:
MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Bioinformatics 22(24): 2996-3002 (2006) |
| 47 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 126-140 (2006) |
| 46 | | Miguel C. Teixeira,
Pedro T. Monteiro,
Pooja Jain,
Sandra Tenreiro,
Alexandra R. Fernandes,
Nuno P. Mira,
Marta Alenquer,
Ana T. Freitas,
Arlindo L. Oliveira,
Isabel Sá-Correia:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.
Nucleic Acids Research 34(Database-Issue): 446-451 (2006) |
| 2005 |
|---|
| 45 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions.
APBC 2005: 273-282 |
| 44 | | Luís M. S. Russo,
Arlindo L. Oliveira:
An Efficient Algorithm for Generating Super Condensed Neighborhoods.
CPM 2005: 104-115 |
| 43 | | André L. Martins,
Helena Sofia Pinto,
Arlindo L. Oliveira:
Using a More Powerful Teacher to Reduce the Number of Queries of the L* Algorithm in Practical Applications.
EPIA 2005: 325-336 |
| 42 | | Luís M. S. Russo,
Arlindo L. Oliveira:
Faster Generation of Super Condensed Neighbourhoods Using Finite Automata.
SPIRE 2005: 246-255 |
| 41 | | Sara C. Madeira,
Arlindo L. Oliveira:
A Linear Time Biclustering Algorithm for Time Series Gene Expression Data.
WABI 2005: 39-52 |
| 40 | | Miguel M. F. Bugalho,
Arlindo L. Oliveira:
Inference of regular languages using state merging algorithms with search.
Pattern Recognition 38(9): 1457-1467 (2005) |
| 2004 |
|---|
| 39 | | José M. Fernandes,
Marcelino B. Santos,
Arlindo L. Oliveira,
João Paulo Teixeira:
A Probabilistic Method for the Computation of Testability of RTL Constructs.
DATE 2004: 176-181 |
| 38 | | José Poveda,
Michael Gould,
Arlindo L. Oliveira:
A New Quick Point Location Algorithm.
ER (Workshops) 2004: 184-196 |
| 37 | | Cláudia Antunes,
Arlindo L. Oliveira:
Constraint Relaxations for Discovering Unknown Sequential Patterns.
KDID 2004: 11-32 |
| 36 | | Alexandra M. Carvalho,
Arlindo L. Oliveira,
Ana T. Freitas,
Marie-France Sagot:
A parallel algorithm for the extraction of structured motifs.
SAC 2004: 147-153 |
| 35 | | Alexandra M. Carvalho,
Ana T. Freitas,
Arlindo L. Oliveira,
Marie-France Sagot:
Efficient Extraction of Structured Motifs Using Box-Links.
SPIRE 2004: 267-268 |
| 34 | | Sara C. Madeira,
Arlindo L. Oliveira:
Biclustering Algorithms for Biological Data Analysis: A Survey.
IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 24-45 (2004) |
| 33 | | Alberto H. F. Laender,
Arlindo L. Oliveira:
Special issue on string processing and information retrieval.
J. Discrete Algorithms 2(1): 1-2 (2004) |
| 2003 |
|---|
| 32 | | Mario A. Nascimento,
Edleno Silva de Moura,
Arlindo L. Oliveira:
String Processing and Information Retrieval, 10th International Symposium, SPIRE 2003, Manaus, Brazil, October 8-10, 2003, Proceedings
Springer 2003 |
| 31 | | Ana T. Freitas,
Arlindo L. Oliveira:
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation.
DATE 2003: 10764-10769 |
| 30 | | Sara C. Madeira,
Arlindo L. Oliveira,
Catarina S. Conceição:
A Data Mining Approach to Credit Risk Evaluation and Behaviour Scoring.
EPIA 2003: 184-188 |
| 29 | | Joel R. Phillips,
João Afonso,
Arlindo L. Oliveira,
Luis Miguel Silveira:
Analog Macromodeling using Kernel Methods.
ICCAD 2003: 446-453 |
| 28 | | Cláudia Antunes,
Arlindo L. Oliveira:
Generalization of Pattern-Growth Methods for Sequential Pattern Mining with Gap Constraints.
MLDM 2003: 239-251 |
| 27 | | Paulo Trezentos,
Arlindo L. Oliveira:
Metrics for Grid Applicability: A Distributed Elliptic Curve Platform Assessment.
PPAM 2003: 864-871 |
| 26 | | Ana Cardoso-Cachopo,
Arlindo L. Oliveira:
An Empirical Comparison of Text Categorization Methods.
SPIRE 2003: 183-196 |
| 25 | | Arlindo L. Oliveira,
Rajeev Murgai:
On the problem of gate assignment under different rise and fall delays.
IEEE Trans. on CAD of Integrated Circuits and Systems 22(6): 807-814 (2003) |
| 2002 |
|---|
| 24 | | Alberto H. F. Laender,
Arlindo L. Oliveira:
String Processing and Information Retrieval, 9th International Symposium, SPIRE 2002, Lisbon, Portugal, September 11-13, 2002, Proceedings
Springer 2002 |
| 23 | | Cláudia Antunes,
Arlindo L. Oliveira:
Inference of Sequential Association Rules Guided by Context-Free Grammars.
ICGI 2002: 1-13 |
| 22 | | José C. Monteiro,
Arlindo L. Oliveira:
Implicit FSM decomposition applied to low-power design.
IEEE Trans. VLSI Syst. 10(5): 560-565 (2002) |
| 2001 |
|---|
| 21 | | Arlindo L. Oliveira:
Techniques for the creation of digital watermarks in sequentialcircuit designs.
IEEE Trans. on CAD of Integrated Circuits and Systems 20(9): 1101-1117 (2001) |
| 20 | | Arlindo L. Oliveira,
João P. Marques Silva:
Efficient Algorithms for the Inference of Minimum Size DFAs.
Machine Learning 44(1/2): 93-119 (2001) |
| 2000 |
|---|
| 19 | | Arlindo L. Oliveira:
Grammatical Inference: Algorithms and Applications, 5th International Colloquium, ICGI 2000, Lisbon, Portugal, September 11-13, 2000, Proceedings
Springer 2000 |
| 18 | | José C. Monteiro,
Arlindo L. Oliveira:
FSM decomposition by direct circuit manipulation applied to low power design.
ASP-DAC 2000: 351-358 |
| 17 | | Arlindo L. Oliveira,
Rajeev Murgai:
An Exact Gate Assignment Algorithm for Tree Circuits Under Rise and Fall Delays.
ICCAD 2000: 451-457 |
| 1999 |
|---|
| 16 | | Arlindo L. Oliveira:
Robust Techniques for Watermarking Sequential Circuit Designs.
DAC 1999: 837-842 |
| 15 | | Antônio Mota,
Nuno Ferreira,
Arlindo L. Oliveira,
José C. Monteiro:
Integrating Dynamic Power Management in the Design Flow.
VLSI 1999: 233-244 |
| 14 | | Jorge M. Pena,
Arlindo L. Oliveira:
A new algorithm for exact reduction of incompletely specified finite state machines.
IEEE Trans. on CAD of Integrated Circuits and Systems 18(11): 1619-1632 (1999) |
| 1998 |
|---|
| 13 | | Rajeev Murgai,
Masahiro Fujita,
Arlindo L. Oliveira:
Using Complementation and Resequencing to Minimize Transitions.
DAC 1998: 694-697 |
| 12 | | José C. Monteiro,
Arlindo L. Oliveira:
Finite State Machine Decomposition For Low Power.
DAC 1998: 758-763 |
| 11 | | Jorge M. Pena,
Arlindo L. Oliveira:
A new algorithm for the reduction of incompletely specified finite state machines.
ICCAD 1998: 482-489 |
| 10 | | Arlindo L. Oliveira,
João P. Marques Silva:
Efficient Search Techniques for the Inference of Minimum Size Finite Automata.
SPIRE 1998: 81-89 |
| 9 | | Arlindo L. Oliveira,
Luca P. Carloni,
Tiziano Villa,
Alberto L. Sangiovanni-Vincentelli:
Exact Minimization of Binary Decision Diagrams Using Implicit Techniques.
IEEE Trans. Computers 47(11): 1282-1296 (1998) |
| 1997 |
|---|
| 8 | | Vasco M. Manquinho,
Paulo F. Flores,
João P. Marques Silva,
Arlindo L. Oliveira:
Prime Implicant Computation Using Satisfiability Algorithms.
ICTAI 1997: 232-239 |
| 1996 |
|---|
| 7 | | Arlindo L. Oliveira,
Stephen Edwards:
Limits of Exact Algorithms For Inference of Minimum Size Finite State Machines.
ALT 1996: 59-66 |
| 6 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
Using the Minimum Description Length Principle to Infer Reduced Ordered Decision Graphs.
Machine Learning 25(1): 23-50 (1996) |
| 1995 |
|---|
| 5 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
Inferring Reduced Ordered Decision Graphs of Minimum Description Length.
ICML 1995: 421-429 |
| 1993 |
|---|
| 4 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
Learning Complex Boolean Functions: Algorithms and Applications.
NIPS 1993: 911-918 |
| 1992 |
|---|
| 3 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
Constructive Induction Using a Non-Greedy Strategy for Feature Selection.
ML 1992: 355-360 |
| 1991 |
|---|
| 2 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
LSAT-An Algorithm for the Synthesis of Two Level Threshold Gate Networks.
ICCAD 1991: 130-133 |
| 1 | | Arlindo L. Oliveira,
Alberto L. Sangiovanni-Vincentelli:
Learning Concepts by Synthesizing Minimal Threshold Gate Networks.
ML 1991: 193-197 |
