2009 | ||
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29 | Ken Youens-Clark, Benjamin Faga, Immanuel Yap, Lincoln Stein, Doreen Ware: CMap 1.01: a comparative mapping application for the Internet. Bioinformatics 25(22): 3040-3042 (2009) | |
28 | Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio: Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Research 37(Database-Issue): 619-622 (2009) | |
2008 | ||
27 | Payan Canaran, Edward S. Buckler, Jeffrey Glaubitz, Lincoln Stein, Qi Sun, Wei Zhao, Doreen Ware: Panzea: an update on new content and features. Nucleic Acids Research 36(Database-Issue): 1041-1043 (2008) | |
26 | Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg, Susan McCouch, Anuradha Pujar, Leonore Reiser, Seung Yon Rhee, Martin M. Sachs, Mary Schaeffer, Lincoln Stein, Peter Stevens, Leszek Vincent, Felipe Zapata, Doreen Ware: The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research 36(Database-Issue): 449-454 (2008) | |
25 | Chengzhi Liang, Pankaj Jaiswal, Claire Hebbard, Shuly Avraham, Edward S. Buckler, Terry M. Casstevens, Bonnie Hurwitz, Susan McCouch, Junjian Ni, Anuradha Pujar, Dean Ravenscroft, Liya Ren, William Spooner, Isaak Tecle, Jim Thomason, Chih-Wei Tung, Xuehong Wei, Immanuel Yap, Ken Youens-Clark, Doreen Ware, Lincoln Stein: Gramene: a growing plant comparative genomics resource. Nucleic Acids Research 36(Database-Issue): 947-953 (2008) | |
2007 | ||
24 | Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein: Reactome: An integrated expert model of human molecular processes and access toolkit. J. Integrative Bioinformatics 4(3): (2007) | |
2006 | ||
23 | Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu: Reactome - A Knowledgebase of Biological Pathways. OTM Workshops (1) 2006: 710-719 | |
22 | Payan Canaran, Lincoln Stein, Doreen Ware: Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support. Bioinformatics 22(7): 885-886 (2006) | |
21 | Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware, William Spooner, Ken Youens-Clark, Liya Ren, Chengzhi Liang, Wei Zhao, Kiran Ratnapu, Benjamin Faga, Payan Canaran, Molly Fogleman, Claire Hebbard, Shuly Avraham, Steven Schmidt, Terry M. Casstevens, Edward S. Buckler, Lincoln Stein, Susan McCouch: Gramene: a bird's eye view of cereal genomes. Nucleic Acids Research 34(Database-Issue): 717-723 (2006) | |
20 | Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa Fulton, Jeffrey Glaubitz, Edward S. Buckler, John Doebley, Brandon Gaut, Major Goodman, Jim Holland, Stephen Kresovich, Michael D. McMullen, Lincoln Stein, Doreen Ware: Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Research 34(Database-Issue): 752-757 (2006) | |
2005 | ||
19 | Xiaokang Pan, Lincoln Stein, Volker Brendel: SynBrowse: a synteny browser for comparative sequence analysis. Bioinformatics 21(17): 3461-3468 (2005) | |
18 | G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, G. R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein: Reactome: a knowledgebase of biological pathways. Nucleic Acids Research 33(Database-Issue): 428-432 (2005) | |
2004 | ||
17 | Christopher Maher, Marja Timmermans, Lincoln Stein, Doreen Ware: Identifying MicroRNAs in Plant Genomes. CSB 2004: 718-723 | |
16 | Phillip W. Lord, Sean Bechhofer, Mark D. Wilkinson, Gary Schiltz, Damian Gessler, Duncan Hull, Carole A. Goble, Lincoln Stein: Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt. International Semantic Web Conference 2004: 350-364 | |
2003 | ||
15 | Gudmundur A. Thorisson, Lincoln Stein: The SNP Consortium website: past, present and future. Nucleic Acids Research 31(1): 124-127 (2003) | |
2002 | ||
14 | Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steven Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, Lincoln Stein: Gramene: a resource for comparative grass genomics. Nucleic Acids Research 30(1): 103-105 (2002) | |
2001 | ||
13 | Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein: The Distributed Annotation System. BMC Bioinformatics 2: 7 (2001) | |
12 | Lincoln Stein, Paul W. Sternberg, Richard Durbin, Jean Thierry-Mieg, John Spieth: WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Research 29(1): 82-86 (2001) | |
1999 | ||
11 | Lincoln Stein: SBOX: Put CGI Scripts in a Box. USENIX Annual Technical Conference, General Track 1999: 145-155 | |
1998 | ||
10 | Nathan Goodman, Steve Rozen, Lincoln Stein: The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories. ISMB 1998: 69-77 | |
9 | Nathan Goodman, Steve Rozen, Lincoln Stein, A. G. Smith: The LabBase system for data management in large scale biology research laboratories. Bioinformatics 14(7): 562-574 (1998) | |
1997 | ||
8 | Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander: Building human genome maps with radiation hybrids. RECOMB 1997: 277-286 | |
7 | Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander: Building Human Genome Maps with Radiation Hybrids. Journal of Computational Biology 4(4): 487-504 (1997) | |
1995 | ||
6 | Lincoln Stein: How to Set Up and Maintain a World Wide Web Site: The Guide for Information Providers. Addison-Wesley 1995 | |
1994 | ||
5 | Steve Rozen, Lincoln Stein, Nathan Goodman: Constructing a Domain-Specific DBMS using a Persistent Object System. POS 1994: 526-541 | |
4 | Lincoln Stein, Andre Marquis, Robert Dredge, Mary Pat Reeve, Mark Daly, Steve Rozen, Nathan Goodman: Splicing UNIX into a Genome Mapping Laboratory. USENIX Summer 1994: 221-229 | |
3 | Nathan Goodman, Steve Rozen, Lincoln Stein: Building a Laboratory Information System Around a C++-Based Object-Oriented DBMS. VLDB 1994: 722-729 | |
1993 | ||
2 | Nathan Goodman, Steve Rozen, Lincoln Stein: Requirements for a Deductive Query Language in a Genome-Mapping Database. Workshop on Programming with Logic Databases (Book), ILPS 1993: 259-278 | |
1 | Nathan Goodman, Steve Rozen, Lincoln Stein: Requirements for a Deductive Query Language in the MapBase Genome-Mapping Database. Workshop on Programming with Logic Databases (Informal Proceedings), ILPS 1993: 18-32 |