Computing in Science and Engineering, Volume 10

Volume 10, Number 1, January-February 2008

• Norman Chonacky:
  Where in this World Are You? 3-6
  
• Robert G. Gregerson, Tim H. Lindblom:
  A Unique Textbook for Teaching Courses in Bioinformatics. 7-8
  
• Ani Thakar:
  The Sloan Digital Sky Survey: Drinking from the Fire Hose. 9-12
  
• Eric H. Neilsen Jr.:
  The Sloan Digital Sky Survey Data Archive Server. 13-17
  
• Nolan Li, Ani Thakar:
  CasJobs and MyDB: A Batch Query Workbench. 18-29
  
• Ani R. Thakar, Alexander S. Szalay, George Fekete, Jim Gray:
  The Catalog Archive Server Database Management System. 30-37
  
• Alexander S. Szalay, Ani R. Thakar, Jim Gray:
  The sqlLoader Data-Loading Pipeline. 38-48
  
• Barend J. Thijsse, Bert W. Rust:
  Freestyle Data Fitting and Global Temperatures. 49-59
  
• Jordan Kyriakidis:
  A Generic Approach to Electronic Structure Calculations in Nanoscopic Systems. 60-69
  
• Paul F. Dubois:
  Sprinting Ain't Easy. 70-71
  
• Shan-Ho Tsai, David P. Landau:
  Spin Dynamics: An Atomistic Simulation Tool for Magnetic Systems. 72-79
  
• Michele Vallisneri, Stanislav Babak:
  Python and XML for Agile Scientific Computing. 80-87
  
• Steven P. Callahan, Jason H. Callahan, Carlos Eduardo Scheidegger, Cláudio T. Silva:
  Direct Volume Rendering: A 3D Plotting Technique for Scientific Data. 88-92
  
• Matthias K. Gobbert, Nagaraj K. Neerchal:
  Preparing Graduate Students for Interdisciplinary Careers. 93-95
  
• Francis Sullivan:
  Curb Your Enthusiasm. 96
  

Volume 10, Number 2, March-April 2008

• Norman Chonacky:
  Turning a Page and Learning Something Useful. 4-5
  
• Pam Frost Gorder:
  Computer Vision, Inspired by the Human Brain. 6-11
  
• Isabel Beichl, Francis Sullivan:
  Combinatorics in Computing. 12-13
  
• Bruce Hendrickson, Jonathan W. Berry:
  Graph Analysis with High-Performance Computing. 14-19
  
• John R. Gilbert, Steve Reinhardt, Viral Shah:
  A Unified Framework for Numerical and Combinatorial Computing. 20-25
  
• Ivona Bezáková:
  Sampling Binary Contingency Tables. 26-31
  
• Heiko Bauke:
  Passing Messages to Lonely Numbers. 32-40
  
• Yanling Liu, Jim X. Chen, Lin Yang:
  Real-Time Photorealistic Virtual Human Anatomy. 41-47
  
• Lei Shi, Xin Yang, Hailang Pan:
  3D Face Visualization Using Grid Light. 48-54
  
• Gaël Varoquaux:
  Agile Computer Control of a Complex Experiment. 55-59
  
• Bill Feiereisen, George K. Thiruvathukal:
  At Issue. 60-64
  
• Joe Kaylor, George K. Thiruvathukal:
  A Virtual Computing Laboratory. 65-69
  
• Debashish Chowdhury:
  Molecular Motors: Design, Mechanism, and Control. 70-77
  
• Kyungmin Ham, Heath A. Barnett, Leslie G. Butler:
  Burning Issues in Tomography Analysis. 78-81
  
• Michael A. Gray:
  Multiphysics Technologies. 82-84
  
• R. Torsten Clay, Richard Gass:
  Books. 85-87
  
• Charles Day:
  The Irony of Craigslist. 88
  

Volume 10, Number 3, May-June 2008

• Norman Chonacky:
  Back to the Future?. 3-4
  
• Greg Wilson:
  Those Who Will Not Learn From History.... 5-6
  
• Paul F. Dubois:
  Brain Cancer May Be the Least of Our Worries. 7-8
  
• Cláudio T. Silva, Joel E. Tohline:
  Computational Provenance. 9-10
  
• Juliana Freire, David Koop, Emanuele Santos, Cláudio T. Silva:
  Provenance for Computational Tasks: A Survey. 11-21
  
• Andrew Dolgert, Lawrence Gibbons, Christopher D. Jones, Valentin Kuznetsov, Mirek Riedewald, Daniel Riley, Gregory J. Sharp, Peter Wittich:
  Provenance in High-Energy Physics Workflows. 22-29
  
• Erik W. Anderson, James P. Ahrens, Katrin Heitmann, Salman Habib, Cláudio T. Silva:
  Provenance in Comparative Analysis: A Study in Cosmology. 30-37
  
• Simon Miles, Paul T. Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, Luc Moreau:
  Provenance: The Bridge Between Experiments and Data. 38-46
  
• Jose Manuel Gómez-Pérez, Óscar Corcho:
  Problem-Solving Methods for Understanding Process Executions. 47-52
  
• António M. Baptista, Bill Howe, Juliana Freire, David Maier, Cláudio T. Silva:
  Scientific Exploration in the Era of Ocean Observatories. 53-58
  
• Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, Matthew L. Trawick:
  Why Computer Architecture Matters. 59-63
  
• Javier E. Hasbun:
  How Do Nerve Cells Compute?. 64-65
  
• Muhammad Sahimi, S. Mehdi Vaez Allaei:
  Numerical Simulation of Wave Propagation, Part I: Sequential Computing. 66-75
  
• Konstantin Läufer:
  A Stroll through Domain-Driven Development with Naked Objects. 76-83
  
• Jakub Kurzak, Alfredo Buttari, Piotr Luszczek, Jack Dongarra:
  The PlayStation 3 for High-Performance Scientific Computing. 84-87
  
• Francis Sullivan:
  I Wandered Lonely as a Cloud. 88
  

Volume 10, Number 4, July-August 2008

• Norman Chonacky:
  Ten Years and Counting?. 3
  
• Pam Frost Gorder:
  Medical Software has Astronomers Seeing Stars. 4-9
  
• Maria Fyta, Simone Melchionna, Efthimios Kaxiras, Sauro Succi:
  Multiscale Simulation of Nanobiological Flows. 10-19
  
• Chad Jones, Kwan-Liu Ma, Stéphane Ethier, Wei-Li Lee:
  An Integrated Exploration Approach to Visualizing Multivariate Particle Data. 20-29
  
• Chuan Zhou, Xiaogang Jin, Charlie C. L. Wang:
  Efficient and Stable Simulation of Cloth Undergoing Large Rotations. 30-40
  
• Raquel S. Macedo, Marcelo F. Alfradique, Marcelo Castier:
  Automatic Generation of Matlab Functions Using Mathematica and Thermath. 41-49
  
• Natividad Duro, Raquel Dormido, Héctor Vargas, Sebastian Dormido-Canto, José Sánchez, Gonzalo Farias, Francisco Esquembre, Sebastián Dormido:
  An Integrated Virtual and Remote Control Lab: The Three-Tank System as a Case Study. 50-59
  
• Mohamed Sayeed, Hansang Bae, Yili Zheng, Brian Armstrong, Rudolf Eigenmann, Faisal Saied:
  Measuring High-Performance Computing with Real Applications. 60-70
  
• Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, Matthew L. Trawick:
  Why Computer Architecture Matters: Memory Access. 71-75
  
• Muhammad Sahimi, S. Mehdi Vaez Allaei:
  Numerical Simulation of Wave Propagation, Part II: Parallel Computing. 76-83
  
• Joel E. Tohline:
  Where Is My Digital Holographic Display?. 84-85
  
• Alexander Pletzer, Douglas McCune, Stefan Muszala, Srinath Vadlamani, Scott Kruger:
  Exposing Fortran Derived Types to C and Other Languages. 86-92
  
• Paul F. Dubois:
  Goodbye to All That. 93-95
  
• Charles Day:
  From First Principles--Gauging the Web's Impact on Scientific Journals. 96
  

Volume 10, Number 5, September-October 2008

• Norman Chonacky:
  Coming to a Digital Library Near You. 3-4
  
• Stephen Weppner:
  Computational Methods with Depth and Flair. 5-8
  
• Scott Lathrop, Thomas Murphy:
  High-Performance Computing Education. 9-11
  
• Steven I. Gordon, Kate Carey, Ignatios Vakalis:
  A Shared, Interinstitutional Undergraduate Minor Program in Computational Science. 12-16
  
• Gerhard Klimeck, Michael McLennan, Sean P. Brophy, George B. Adams III, Mark S. Lundstrom:
  nanoHUB.org: Advancing Education and Research in Nanotechnology. 17-23
  
• Robert F. Tinker, Qian Xie:
  Applying Computational Science to Education: The Molecular Workbench Paradigm. 24-27
  
• Deana D. Pennington, William K. Michener, Samantha Katz, Laura L. Downey, Mark Schildhauer:
  Transforming Scientists through Technical Education: A View from the Trenches. 28-33
  
• Shawn C. Sendlinger, Don J. DeCoste, Thom H. Dunning, Diana Avalos Dummitt, Eric Jakobsson, Dave R. Mattson, Edee Norman Wiziecki:
  Transforming Chemistry Education through Computational Science. 34-39
  
• David A. Joiner, Charles Peck, Thomas Murphy, Paul Gray:
  Education, Outreach, and Training for High-Performance Computing. 40-45
  
• Ahmed K. Elmagarmid, Arjmand Samuel, Mourad Ouzzani:
  Community-Cyberinfrastructure-Enabled Discovery in Science and Engineering. 46-53
  
• Hamid Reza Naji:
  Solving Complex Computational Problems Using Multiagents Implemented in Hardware. 54-63
  
• Elena Villalón:
  High-Dimensionality Data Reduction with Java. 64-69
  
• Peter Messmer, Paul J. Mullowney, Brian E. Granger:
  GPULib: GPU Computing in High-Level Languages. 70-73
  
• Cosmin Pancratov, Jacob M. Kurzer, Kelly A. Shaw, Matthew L. Trawick:
  Why Computer Architecture Matters: Thinking through Trade-offs in Your Code. 74-79
  
• Francis Sullivan:
  This Time for Sure. 80
  

Volume 10, Number 6, November-December 2008

• Norman Chonacky:
  Ave Atque Vale. 3-5
  
• Pam Frost Gorder:
  Coming Soon: Research in a Cloud. 6-10
  
• Timothy P. Chartier:
  A Googol of Information about Google. 11-12
  
• Volodymyr V. Kindratenko, George K. Thiruvathukal, Steven A. Gottlieb:
  High-Performance Computing Applications on Novel Architectures. 13-15
  
• Paul R. Woodward, Jagan Jayaraj, Pei-Hung Lin, Pen-Chung Yew:
  Moving Scientific Codes to Multicore Microprocessor CPUs. 16-25
  
• Ivan S. Ufimtsev, Todd J. Martinez:
  Graphical Processing Units for Quantum Chemistry. 26-34
  
• Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu:
  Computing Models for FPGA-Based Accelerators. 35-45
  
• Gottfried Goldrian, Thomas Huth, Benjamin Krill, Jack Lauritsen, Heiko Schick, Ibrahim Ouda, Simon Heybrock, Dieter Hierl, Thilo Maurer, Nils Meyer, Andreas Schäfer, Stefan Solbrig, Thomas Streuer, Tilo Wettig, Dirk Pleiter, Karl-Heinz Sulanke, Frank Winter, Hubert Simma, Sebastiano Fabio Schifano, Raffaele Tripiccione, Andrea Nobile, Matthias Drochner, Thomas Lippert, Zoltán Fodor:
  QPACE: Quantum Chromodynamics Parallel Computing on the Cell Broadband Engine. 46-54
  
• David Matthews, Greg Wilson, Steve M. Easterbrook:
  Configuration Management for Large-Scale Scientific Computing at the UK Met Office. 56-64
  
• Ani Thakar:
  Lessons Learned from the SDSS Catalog Archive Server. 65-71
  
• Michael A. Gray:
  Sage: A New Mathematics Software System. 72-75
  
• George K. Thiruvathukal, Konstantin Läufer:
  What I Did on My Summer Vacation. 76-81
  
• Fábio F. Bernardon, Linh K. Ha, Steven P. Callahan, João Luiz Dihl Comba, Cláudio T. Silva:
  Transfer-Function Specification for Rendering Disparate Volumes. 82-89
  
• Ras B. Pandey, Kelly L. Anderson, Barry L. Farmer:
  Sheets: Entropy Dissipation, Multiscale Dynamics, Dispersion, and Intercalation. 90-98
  
• Daniel Tofan:
  Drawing Chemical Equipment with Adobe Illustrator, Part 1: Basic Drawing and Selection Tools. 100-102
  
• Charles Day:
  Software Makes Hardware. 104