6. BIBE 2006:
Arlington,
Virginia,
USA
Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 16-18 October 2006, Arlington, Virginia, USA.
IEEE Computer Society 2006, ISBN 0-7695-2727-2 
Session 1 :
Protein Structure,
Function,
and Classification
- Mary Qu Yang, Jack Y. Yang:
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences.
3-11
- Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, Xiaohua Hu:
A Language Modeling Text Mining Approach to the Annotation of Protein Community.
12-19
- Bernard Chen, Phang C. Tai, Robert W. Harrison, Yi Pan:
FIK Model: Novel Efficient Granular Computing Model for Protein Sequence Motifs and Structure Information Discovery.
20-26
- Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker:
On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing.
27-34
- Jack Y. Yang, Mary Qu Yang:
Assessing protein function using a combination of supervised and unsupervised learning.
35-44
Session 2 :
Pattern Discovery and Data Mining
- Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen, Changyong Yu, Yi Zhao, Ge Yu:
Partition Frequency Distance based Filter Method for Finding Approximate Repetitions in DNA Sequences.
45-52
- Kang Ning, Hoong Kee Ng, Hon Wai Leong:
Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences.
53-60
- Wei Peng, Tao Li, Giri Narasimhan:
Mining the Database of Transcription Binding Sites.
61-64
- Jaime Davila, Sanguthevar Rajasekaran:
Extending Pattern Branching to Handle Challenging Instances.
65-69
- Henry C. M. Leung, Francis Y. L. Chin:
Discovering DNA Motifs with Nucleotide Dependency.
70-80
Session 3:
Microarrays
- Kaushik Sinha, Ruoming Jin, Gagan Agrawal, Helen Piontkivska:
Exploratory Tools for FollowUp Studies to Microarray Experiments.
81-85
- Yuhai Zhao, Guoren Wang, Ying Yin, Ge Yu:
Mining Positive and Negative Co-regulation Patterns from Microarray Data.
86-93
- Youngmi Yoon, Jongchan Lee, Sanghyun Park:
Building a Classifier for Integrated Microarray Datasets through Two-Stage Approach.
94-102
- Wei Peng, Tao Li:
IntClust: A Software Package for Clustering Replicated Microarray Data.
103-109
- Liping Ji, Kenneth Wei-Liang Mock, Kian-Lee Tan:
Quick Hierarchical Biclustering on Microarray Gene Expression Data.
110-120
Session 4:
Sequence Alignment and Database Search
- Abdullah N. Arslan, Dan He:
An improved algorithm for the regular expression constrained multiple sequence alignment problem.
121-126
- Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell:
Large Grain Size Stochastic Optimization Alignment.
127-134
- Qiang Xue, James R. Cole, Sakti Pramanik:
Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model.
135-140
- Xuan Zhang, Gagan Agrawal:
A Tool for Supporting Integration Across Multiple FlatFile Datasets.
141-148
- Rimon Mikhaiel, Guohui Lin, Eleni Stroulia:
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments.
149-158
Session 5:
Phylogenies,
Trees,
and Visualization
- Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar:
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees.
159-164
- Yuanjian Feng, Zuyi Wang, Yitan Zhu, Jianhua Xuan, David J. Miller:
Learning the Tree of Phenotypes Using Genomic Data and VISDA.
165-170
- Margaret H. Dunham, Donya Quick, Yuhang Wang, Monnie McGee, Jim Waddle:
Visualization of DNA/RNA Structure using Temporal CGRs.
171-178
- Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer:
Isolation and Visualization of Codon Usage Biases.
179-183
- Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus Neuhaus:
Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration.
183-192
- Bing Bing Zhou, Monther Tarawneh, Pinghao Wang, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree.
193-200
Session 6:
DNA & RNA Sequence and Structure
- Xiaoming Wu, Jason Tsong-Li Wang, Katherine G. Herbert:
A New Kernel Method for RNA Classification.
201-208
- Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang:
RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research.
209-212
- Sridhar Ramachandran, Travis E. Doom, Michael L. Raymer, Dan E. Krane:
Parsimony approach to test the Evolving Master Gene hypothesis for human Alu repeats.
213-219
- Abdullah N. Arslan:
An algorithm for string edit distance allowing substring reversals.
220-226
- Young Bun Kim, Jean Gao:
Unsupervised Gene Selection For High Dimensional Data.
227-234
Session 7:
Clustering,
Similarity Metrics,
and Near Neighbor Methods
- Zhipeng Cai, Lizhe Xu, Yi Shi, Mohammad R. Salavatipour, Randy Goebel, Guohui Lin:
Using Gene Clustering to Identify Discriminatory Genes with Higher Classification Accuracy.
235-242
- Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
Semi-Supervised Clustering Models for Clinical Risk Assessment.
243-250
- Chuan Lin, Daxin Jiang, Aidong Zhang:
Prediction of Protein Function Using Common-Neighbors in Protein-Protein Interaction Networks.
251-260
- Elinor Velasquez, Emmanuel R. Yera, Rahul Singh:
Determining Molecular Similarity for Drug Discovery using the Wavelet Riemannian Metric.
261-268
- Xuan Zhang, Ruoming Jin, Gagan Agrawal:
Assigning Schema Labels Using Ontology And Hueristics.
269-280
Session 8:
Regulatory and Metabolic Networks and Bioengineering I
- Osman Abul, Reda Alhajj, Faruk Polat:
Optimal Multi-Objective Control Method for Discrete Genetic Regulatory Networks.
281-284
- Zachary M. Saul, Vladimir Filkov:
Methods for Random Modularization of Biological Networks.
285-288
- Young-Rae Cho, Woochang Hwang, Aidong Zhang:
Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction.
289-298
- Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe:
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data.
299-306
- Xiang Xiao, Malika Mahoui, Zina Ben-Miled, B. Choudhury:
The Automation of SIBIOS Workflow Composition.
307-314
Session 9:
Bioengineering II
- Hisham Al-Mubaid, Hoa A. Nguyen:
Using MEDLINE as Standard Corpus for Measuring Semantic Similarity in the Biomedical Domain.
315-318
- Lothar Richter, Stefan Hechtl, Stefan Kramer:
Leveraging Chemical Background Knowledge for the Prediction of Growth Inhibition.
319-324
- Marisol Giardina, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients.
325-331
- Jung Hun Oh, Animesh Nandi, Prem Gurnani, Peter Bryant-Greenwood, Kevin P. Rosenblatt, Jean Gao:
Prediction of labor for pregnant women using high-resolution mass spectrometry data.
332-339
- Yi Zhu, Tong Lee Chen, Wanping Zhang, Tzyy-Ping Jung, Jeng-Ren Duann, Scott Makeig, Chung-Kuan Cheng:
Noninvasive Study of the Human Heart using Independent Component Analysis.
340-347
- Anna Esposito, Nikolaos G. Bourbakis:
The Role of Timing in Speech Perception and Speech Production Processes and its Effects on Language Impaired Individuals.
348-356
- Nikolaos G. Bourbakis, Anna Esposito, Despina Kavraki:
Analysis of Invariant Meta-features for Learning and Understanding Disable People's Emotional Behavior Related to Their Health Conditions: A Case Study.
357-369
Copyright © Fri Mar 12 17:06:52 2010
by Michael Ley (ley@uni-trier.de)
