DTMBIO 2009: Hong Kong, China

Doheon Lee, Russ B. Altman, Min Song, Jun Huan (Eds.): Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009. ACM 2009, ISBN 978-1-60558-803-2

Keynote address

Xiaohua Hu:
Data mining in bioinformatics: challenges and opportunities. 1

Bio-data mining

Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, J. C. Chen, Francis Y. L. Chin:
Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. 3-10
Younghoon Kim, Imhoi Koo, Byung Hwa Jung, Bong Chul Chung, Doheon Lee:
Multivariate classification of urine metabolome profiles for breast cancer diagnosis. 11-18
Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martínez:
DrugNerAR: linguistic rule-based anaphora resolver for drug-drug interaction extraction in pharmacological documents. 19-26
Chan-seok Jeong, Dongsup Kim:
Linear predictive coding representation of correlated mutation for protein sequence alignment. 27-34
Inho Park, Kwang H. Lee, Doheon Lee:
Mining cancer genes with running-sum statistics. 35-42

Bio-text mining

Hwanjo Yu, Taehoon Kim, Jinoh Oh, Ilhwan Ko, Sungchul Kim, Wook-Shin Han:
Enabling multi-level relevance feedback on pubmed by integrating rank learning into DBMS. 43-50
Ali Zeeshan Ijaz, Min Song, Doheon Lee:
MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge. 51-58
Jeong Woo Son, Seong-Bae Park:
Learning word sense disambiguation in biomedical text with difference between training and test distributions. 59-66

Bio-data mining short papers

Yang Cong, Takeyuki Tamura, Tatsuya Akutsu, Wai-Ki Ching:
Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles. 67-70
Woo-Keun Chung, Hyong-Jun Kim, Hwan-Gue Cho:
A web-based comparative visualization system for human endogenous RetroVirus(HERV) on whole genomes. 71-74
Kam Swee Ng, Hyung-Jeong Yang, Sun-Hee Kim:
Incremental non-gaussian analysis of microarray gene expression data. 75-78

Bio-text mining short papers

Ikumi Suzuki, Kazuo Hara, Masashi Shimbo, Yuji Matsumoto:
A graph-based approach for biomedical thesaurus expansion. 79-82
Priyanka Sharad Prabhu, Shamkant B. Navathe, Stephen Tyler, Venu Dasigi, Neha Narkhede, Balaji Palanisamy:
LITSEEK: public health literature search by metadata enhancement with external knowledge bases. 83-88
Sarvnaz Karimi, Justin Zobel, Stefan Pohl, Falk Scholer:
The challenge of high recall in biomedical systematic search. 89-92

Posters

Younghoon Kim, Doheon Lee, Yongseong Cho, Sang Joo Lee:
A large-scale gene network inference system for systems biology on supercomputing resources. 93-94
Jeremias Murillo, Min Song:
An outcome discovery system to determine mortality factors in primary care facilities. 95-96