Stefan Kurtz

	2009
33		Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25(24): 3251-3258 (2009)
32		Sascha Steinbiss, Gordon Gremme, Christin Schärfer, Malte Mader, Stefan Kurtz: AnnotationSketch: a genome annotation drawing library. Bioinformatics 25(4): 533-534 (2009)
	2008
31		David Ellinghaus, Stefan Kurtz, Ute Willhoeft: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9: (2008)
30		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinformatics 9: (2008)
29		Julia Herold, Stefan Kurtz, Robert Giegerich: Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9: (2008)
28		Enno Ohlebusch, Stefan Kurtz: Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. Journal of Computational Biology 15(4): 357-377 (2008)
	2007
27		Stefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek: Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204
26		Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg: Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinformatics 8(S-8): (2007)
	2006
25		Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7: 389 (2006)
	2005
24		Andrew E. Torda, Stefan Kurtz, Matthias Rarey: Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005 GI 2005
23		Gordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz: Engineering a software tool for gene structure prediction in higher organisms. Information & Software Technology 47(15): 965-978 (2005)
	2004
22		Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz: PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64
21		Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich: GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20(12): 1964-1965 (2004)
20		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004)
19		Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 301-304 (2004)
	2003
18		Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz: Local Similarity in RNA Secondary Structures. CSB 2003: 159-168
17		Patrick Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak: An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings in Bioinformatics 4(2): 105-123 (2003)
16		Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31(13): 3767-3770 (2003)
15		Robert Giegerich, Stefan Kurtz, Jens Stoye: Efficient implementation of lazy suffix trees. Softw., Pract. Exper. 33(11): 1035-1049 (2003)
	2002
14		Michael Höhl, Stefan Kurtz, Enno Ohlebusch: Efficient multiple genome alignment. ISMB 2002: 312-320
13		Mohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz: Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43
12		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463
	2001
11		Stefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger: HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research 29(1): 196-198 (2001)
	2000
10		Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich: Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
9		Bernhard Balkenhol, Stefan Kurtz: Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice. IEEE Trans. Computers 49(10): 1043-1053 (2000)
	1999
8		Robert Giegerich, Stefan Kurtz, Jens Stoye: Efficient Implementation of Lazy Suffix Trees. Algorithm Engineering 1999: 30-42
7		Bernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov: Modifications of the Burrows and Wheeler Data Compression Algorithm. Data Compression Conference 1999: 188-197
6		Stefan Kurtz, Chris Schleiermacher: REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15(5): 426-427 (1999)
5		Stefan Kurtz: Reducing the space requirement of suffix trees. Softw., Pract. Exper. 29(13): 1149-1171 (1999)
	1997
4		Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
3		Robert Giegerich, Stefan Kurtz: From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997)
	1995
2		Robert Giegerich, Stefan Kurtz: A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995)
	1994
1		Robert Giegerich, Stefan Kurtz: Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240

Coauthor Index

1	Mohamed Ibrahim Abouelhoda	[12] [13] [20] [30]
2	Bernhard Balkenhol	[7] [9]
3	Michael Beckstette	[22] [25] [33]
4	Ewan Birney	[26] [27]
5	Volker Brendel	[23]
6	Patrick Chain	[17]
7	Jomuna V. Choudhuri	[21]
8	Sergei Denissov	[26]
9	David Ellinghaus	[31]
10	Paul Flicek	[26] [27]
11	Robert Giegerich	[1] [2] [3] [8] [10] [15] [16] [18] [19] [21] [22] [25] [29] [33]
12	Stefan Gräf	[11] [26] [27]
13	Roland Green	[26]
14	Gordon Gremme	[23] [32]
15	Julia Herold	[29]
16	Matthias Höchsmann	[18]
17	Michael Höhl	[14]
18	Robert Homann	[22] [25] [33]
19	Martijn A. Huynen	[26] [27]
20	Jan Krüger	[16] [19]
21	Malte Mader	[32]
22	Henning Mersch	[16]
23	Eugene W. Myers (Gene Myers)	[4]
24	Fiona G. G. Nielsen	[26] [27]
25	Enno Ohlebusch	[10] [12] [13] [14] [17] [20] [28] [30]
26	Matthias Rarey	[24]
27	Christin Schärfer	[32]
28	Chris Schleiermacher	[6] [10] [21]
29	Alexander Sczyrba	[16] [19]
30	Yuri M. Shtarkov	[7]
31	Tom Slezak	[17]
32	Michael E. Sparks	[23]
33	Gerhard Steger	[11]
34	Sascha Steinbiss	[32]
35	Jens Stoye	[8] [10] [15]
36	Dirk Strothmann	[11] [22]
37	Henk Stunnenberg	[26] [27]
38	Thomas Töller	[18]
39	Andrew E. Torda	[24]
40	Ute Willhoeft	[31]
41	Xinmin Zhang	[26]

Colors in the list of coauthors