International Journal of Data Mining and Bioinformatics, Volume 1

Volume 1, Number 1, 2006

Yuanchen He, Yuchun Tang, Yan-Qing Zhang, Rajshekhar Sunderraman:
Adaptive Fuzzy Association Rule mining for effective decision support in biomedical applications. 3-18
Bill Andreopoulos, Aijun An, Xiaogang Wang:
Bi-level clustering of mixed categorical and numerical biomedical data. 19-56
Jason T. L. Wang, Xiaoming Wu:
Kernel design for RNA classification using Support Vector Machines. 57-76
Rui Yamaguchi, Tomoyuki Higuchi:
State-space approach with the maximum likelihood principle to identify the system generating time-course gene expression data of yeast. 77-87
Ying Liu, Shamkant B. Navathe, Alex Pivoshenko, Venu Dasigi, Ray Dingledine, Brian J. Ciliax:
Text analysis of MEDLINE for discovering functional relationships among genes: evaluation of keyword extraction weighting schemes. 88-110

Yun Zheng, Chee Keong Kwoh:
Dynamic algorithm for inferring qualitative models of Gene Regulatory Networks. 111-137
Xiaoli Li, Soon-Heng Tan, See-Kiong Ng:
Improving domain-based protein interaction prediction using biologically-significant negative dataset. 138-149
Hong Yan, Tuan D. Pham:
Spectral similarity for analysis of DNA microarray time-series data. 150-161
Chris H. Q. Ding, Xiaofeng He, Hui Xiong, Hanchuan Peng, Stephen R. Holbrook:
Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques. 162-177
Sun Kim, Jason Lee:
BAG: a graph theoretic sequence clustering algorithm. 178-200
Henry C. M. Leung, Francis Y. L. Chin:
An efficient motif discovery algorithm with unknown motif length and number of binding sites. 201-215

Shuqin Zhang, Wai-Ki Ching, Michael K. Ng, Tatsuya Akutsu:
Simulation study in Probabilistic Boolean Network models for genetic regulatory networks. 217-240
Qiaofeng Yang, Stefano Lonardi:
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks. 241-247
Minh Ngoc Nguyen, Jagath C. Rajapakse:
Prediction of Protein Secondary Structure with two-stage multi-class SVMs. 248-269
Bo Jin, Yan-Qing Zhang, Binghe Wang:
Granular Kernel Trees with parallel Genetic Algorithms for drug activity comparisons. 270-285
Uros Midic, A. Keith Dunker, Zoran Obradovic:
Exploring alternative knowledge representations for protein secondary-structure prediction. 286-313

Paola Lecca:
Simulating the cellular passive transport of glucose using a time-dependent extension of Gillespie algorithm for stochastic pi-calculus. 315-336
Roger A. Craig, Li Liao:
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles. 337-351
Alessandro Dal Palù, Enrico Pontelli, Jing He, Yonggang Lu:
A Constraint Logic Programming approach to associate 1D and 3D structural components for large protein complexes. 352-371
Ket Fah Chong, Hon Wai Leong:
A Merge-Decoupling Dead End Elimination algorithm for protein side-chain conformation. 372-388
Lawrence H. Reeve, Hyoil Han, Ari D. Brooks:
Biomedical text summarisation using concept chains. 389-407