3. BIBE 2003: Bethesda, Maryland, USA

@proceedings{DBLP:conf/bibe/2003,
  title     = {3rd IEEE International Symposium on BioInformatics and BioEngineering
               (BIBE 2003), 10-12 March 2003, Bethesda, MD, USA},
  booktitle = {BIBE},
  publisher = {IEEE Computer Society},
  year      = {2003},
  isbn      = {0-7695-1907-5},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

Bioinfo-1: Protein Structures and Pathways

• Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
  A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. 3-10
  
• Fariza Tahi, Stefan Engelen, Mireille Régnier:
  A Fast Algorithm for NA Secondary Structure Prediction Including Pseudoknots. 11-17
  
• Yu Chen, Trupti Joshi, Ying Xu, Dong Xu:
  Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. 18-25
  
• Ying Zhao, George Karypis:
  Prediction of Contact Maps Using Support Vector Machines. 26-
  

Bioeng-1: Biomedical Data Engineering

• Peter Clote:
  Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site. 37-44
  
• Richard Eibrand, Paul E. Kennedy, Deirdre Cotter, Ursula MacEvilly, Bing Wu:
  Analysis of Atlantic Salmon Skin Mucus: COPS - A Computer-Based System for Protein Pattern Analysis of 1D SDS-PAGE Gels. 45-52
  
• Xin Huang, Shu-Ching Chen, Mei-Ling Shyu:
  An Open Multiple Instance Learning Framework and Its Application in Drug Activity Prediction Problems. 53-59
  
• Jeffrey D. Johnson, Dietmar Plenz, J. Beggs, Wei Li, M. Mieier, N. Miltner, K. Owe:
  Analysis of Spontaneous Activity in Cultured Brain Tissue Using the Discrete Wavelet Transfor. 60-
  

Bioinfo-2: Phylogenetic Trees

• Mathieu Blanchette, Samson Kwong, Martin Tompa:
  An Empirical Comparison of Tools for Phylogenetic Footprinting. 69-78
  
• Tiffani L. Williams, Bernard M. E. Moret:
  An Investigation of Phylogenetic Likelihood Methods. 79-86
  
• John Bluis, Dong-Guk Shin:
  Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri. 87-94
  
• Michael Hu, Paul E. Kearney, Jonathan H. Badger:
  A Collapsing Method for the Efficient Recovery of Optimal Edges in Phylogenetic Trees. 95-
  

Bioeng-2: Medical Image Processing I

• Francis K. H. Quek, Vishwas Kulkarni, Cemil Kirbas:
  Comparison of Bicubic and Bézier Polynomials for Surface Parameterization in Volumetric Image. 107-114
  
• Fan Shao, Keck Voon Ling, Wan Sing Ng:
  Evolving Bubbles for Prostate Surface Detection from TRUS Images. 115-121
  
• Dawei Gui, Nikolaos V. Tseko:
  Structure-Targeting Fast Magnetic Resonance Imaging Angiography with Partial Collection of the Inverse Space (k-Space) Bbased on the Orientation of the Vessel in Real Spac. 122-125
  
• Joel R. Garbow, Joseph P. Dugas, Mark S. Conradi:
  Respiratory Gating for MRI and MRS in Rodents. 126-
  

Bioinfo-3: Bio-Databases I

• William M. Shui, Nicole Lam, Raymond K. Wong:
  A Novel Laboratory ersion Management System for Tracking Complex Biological Experiments. 133-140
  
• Luay Nakhleh, Daniel P. Miranker, François Barbançon, William H. Piel, Michael J. Donoghue:
  Requirements of Phylogenetic Databases. 141-148
  
• S. Alireza Aghili, Divyakant Agrawal, Amr El Abbadi:
  Filtration of String Proximity Search via Transformation. 149-157
  
• Cynthia Gibas, David Sturgill, Jennifer W. Weller:
  GenoMosaic: On-Demand Multiple Genome Comparison and Comparative Annotatio. 158-
  

Bioeng-3: Biomedical Imaging, Signaling, and Computation

• Jie Zhou:
  Automatic Detection of Premature Ventricular Contraction Using Quantum Neural Networks. 169-173
  
• Cemil Kirbas, Francis K. H. Quek:
  Vessel Extraction in Medical Images by 3D Wave Propagation and Traceback. 174-181
  
• Nawaz Khan, Shahedur Rahman:
  A New Approach to Detect Similar Proteins from 2D Gel. 182-189
  
• Blake T. Larson, Nikolaos V. Tsekos, Arthur G. Erdman:
  A Robotic Device for Minimally Invasive Breast Interventions with Real-Time MRI Guidance. 190-
  

Bioinfo-4: Sequences and Searching

• Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
  An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level. 201-205
  
• Kenneth D. Jarman, William R. Cannon, Kristin H. Jarman, Alejandro Heredia-Langner:
  A Model of Random Sequences for de novo Peptide Sequencing. 206-213
  
• Saurabh Sinha, Martin Tompa:
  Performance Comparison of Algorithms for FindingTranscription Factor Binding Sites. 214-
  

Bioeng-4: Medical Image Processing II

• Vincent T. Y. Ng, Tim Lee, Benny Y. M. Fung:
  Determining the Asymmetries of Skin Lesions with Fuzzy Borders. 223-230
  
• Tarek A. El Doker:
  Unsupervised Iterative Segmentation and Recognition of Anatomic Structures in Medical Imagery Using Second-Order B-Spline Descriptors and Geometric Quasi-Invariants. 231-237
  
• Cemil Kirbas, Francis K. H. Quek:
  Vessel Extractio Techniques and Algorithms: A Surve. 238-245
  
• Frederic Rick McKenzie, Rania Hussein, Jennifer Seevinck, Paul Schellhammer, Jose Diaz:
  Prostate Gland and Extra-Capsular Tissue 3D Reconstruction and Measurement. 246-
  

Bioinfo-5: Bio-Databases II

• Hiroshi Mamitsuka:
  Empirical Evaluation of Ensemble Feature Subset Selection Methods for Learning from a High-Dimensional Database in Drug Desig. 253-257
  
• Zhijie Guan, Hasan M. Jamil:
  Streamlining Biological Data Analysis Using BioFlow. 258-262
  
• Ling Liu, David Buttler, Terence Critchlow, Wei Han, Henrique Paques, Calton Pu, Daniel Rocco:
  BioSeek: Exploiting Source-Capability Information for Integrated Access to Multiple Bioinformatics Data Sources. 263-
  

Bioeng-5: Biological Systems and Models

• Wei Li, Jeffrey D. Johnson:
  A Computational Model of the Role of Deficit-Related Drives in Sequential Movement Learning in a T-Maze Environment. 275-275
  
• Kevin M. Biddell, Jinghong Li, Jeffrey D. Johnson:
  A Biological Mapping of a Learned Avoidance Behavior Model to the Basal Ganglia. 276-280
  
• Hiroshia Tamagawa, Fumio Nogata, Toyotaka Watanabe, Akinori Abe, Suzana Popovic:
  Influence of the Thermal Treatment Applied to PAN Gel on Its Length Change and Genrated Force. 281-
  

Panel

• Nikolaos G. Bourbakis:
  Bioinformatics and Biotechnology Research Issues. 285-
  

Bioinfo-6: Gene Expressions

• Ning Wei, Le Gruenwald, Tyrrell Conway:
  Analyzing the Escherichia coli Gene Expression Data by a Multilayer Adjusted Tree Organizing Map. 289-288
  
• Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng:
  A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. 297-304
  
• Chen-Hsiang Yeang, Tommi Jaakkola:
  Time Series Analysis of Gene Expression and Location Data. 305-312
  
• Yunlong Liu, Hui Bin Sun, Hiroki Yokota:
  Regulating Gene Expression Using Optimal Control Theory. 313-
  

Bioinfo-7: Clustering Algorithms and Molecular Structures

• Jiong Yang, Haixun Wang, Wei Wang, Philip S. Yu:
  Enhanced Biclustering on Expression Data. 321-327
  
• Feng Luo, Kun Tang, Latifur Khan:
  Hierarchical Clustering of Gene Expression Data. 328-335
  
• Matt Coatney, Srinivasan Parthasarathy:
  MotifMiner: A General Toolkit for Efficiently Identifying Common Substructures in Molecules. 336-340
  
• Chern-Hooi Chionh, Zhiyong Huang, Kian-Lee Tan, Zhen Yao:
  Augmenting SSEs with Structural Properties for Rapid Protein Structure Comparison. 341-
  

Bioinfo-8: Bio-Databases III

• Zina Ben-Miled, S. Li, Jesse Martin, Chavali Balagopalakrishna, Omran A. Bukhres, Robert J. Oppelt:
  Load Balancing: A Case Study of a Pharmaceutical Drug Candidate Database. 351-358
  
• Ozgur Ozturk, Hakan Ferhatosmanoglu:
  Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases. 359-366
  
• William M. Shui, Raymond K. Wong:
  Application of XML Schema and Active Rules System in Management and Integration of Heterogeneous Biological Data. 367-374
  
• Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker:
  An Assessment of a Metric Space Database Index to Support Sequence Homology. 375-
  

Bioinfo-9: Clustering Algorithms

• Hiroshi Mamitsuka:
  Detecting Experimental Noises in Protein-Protein Interactions with Iterative Sampling and Model-Based Clustering. 385-392
  
• Daxin Jiang, Jian Pei, Aidong Zhang:
  DHC: A Density-Based Hierarchical Clustering Method for Time Series Gene Expression Dat. 393-400
  
• Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik:
  Determination of the Minimum Sample Size in Microarray Experiments to Cluster Genes Using K-means Clustering. 401-406
  
• Chyun-Shin Cheng, Shiuan-Sz Wang:
  A Repulsive Clustering Algorithm for Gene Expression Data. 407-
  

Bioinfo-10: Prediction, Simulation and Mining Models

• Katia S. Guimarães, Jeane C. B. Melo, George D. C. Cavalcanti:
  Combining Few Neural Networks for Effective Secondary Structure Prediction. 415-420
  
• Gabriel Querrec, Vincent Rodin, Jean François Abgrall, Sébastien Kerdélo, Jacques Tisseau:
  Uses of Multiagents Systems for Simulation of MAPK Pathway. 421-425
  
• Jeffrey J. P. Tsai, J. G. Chang, S. H. Shih, Rong-Ming Chen, H. W. Hsiao, Rouh-Mei Hu, S. N. Chen, M. M. Lee, Falcon F. M. Liu, W. L. Chan:
  A Framework for Cancer-Related Genes Mining over the Internet. 426-435
  
• Doosung Hwang, Farshad Fotouhi, Russell L. Finley Jr., William I. Grosky:
  Predictive Model for Yeast Protein Functions Using Modular Neural Approach. 436-