2009 | ||
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47 | Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster: Methods for comparative metagenomics. BMC Bioinformatics 10(S-1): (2009) | |
46 | Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul: Computing galled networks from real data. Bioinformatics 25(12): (2009) | |
45 | Suparna Mitra, Bernhard Klar, Daniel H. Huson: Visual and statistical comparison of metagenomes. Bioinformatics 25(15): 1849-1855 (2009) | |
44 | Daniel H. Huson: Drawing Rooted Phylogenetic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 103-109 (2009) | |
43 | Daniel H. Huson, Vincent Moulton, Mike A. Steel: Special Section: Phylogenetics. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 4-6 (2009) | |
2008 | ||
42 | Daniel H. Huson, Regula Rupp: Summarizing Multiple Gene Trees Using Cluster Networks. WABI 2008: 296-305 | |
41 | Philippe Gambette, Daniel H. Huson: Improved Layout of Phylogenetic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 472-479 (2008) | |
2007 | ||
40 | Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster: etagenome Analysis using Megan. APBC 2007: 7-16 | |
39 | Daniel H. Huson, Tobias H. Klöpper: Beyond Galled Trees - Decomposition and Computation of Galled Networks. RECOMB 2007: 211-225 | |
38 | Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp: Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics 8: (2007) | |
37 | Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson: OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics 23(13): 1573-1579 (2007) | |
36 | Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker: COPYCAT : cophylogenetic analysis tool. Bioinformatics 23(7): 898-900 (2007) | |
2006 | ||
35 | Daniel H. Huson, Oliver Kohlbacher, Andrei N. Lupas, Kay Nieselt, Andreas Zell: German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany GI 2006 | |
34 | Daniel H. Huson, Mike A. Steel, Jim Whitfield: Reducing Distortion in Phylogenetic Networks. WABI 2006: 150-161 | |
33 | Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson: Identification of plant microRNA homologs. Bioinformatics 22(3): 359-360 (2006) | |
32 | Tobias Dezulian, Martin Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson: CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Research 34(Web-Server-Issue): 400-404 (2006) | |
2005 | ||
31 | Aoife McLysaght, Daniel H. Huson: Comparative Genomics, RECOMB 2005 International Workshop, RCG 2005, Dublin, Ireland, September 18-20, 2005, Proceedings Springer 2005 | |
30 | Daniel H. Huson, Tobias H. Klöpper: Computing recombination networks from binary sequences. ECCB/JBI 2005: 165 | |
29 | Daniel H. Huson, Tobias H. Klöpper, Pete J. Lockhart, Mike A. Steel: Reconstruction of Reticulate Networks from Gene Trees. RECOMB 2005: 233-249 | |
28 | Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster: Whole-genome prokaryotic phylogeny. Bioinformatics 21(10): 2329-2335 (2005) | |
2004 | ||
27 | Olaf Delgado Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson: Syntenic Layout of Two Assemblies of Related Genomes. German Conference on Bioinformatics 2004: 3-12 | |
26 | Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel: Phylogenetic Super-networks from Partial Trees. WABI 2004: 388-399 | |
25 | Daniel H. Huson, Mike A. Steel: Phylogenetic trees based on gene content. Bioinformatics 20(13): 2044-2049 (2004) | |
24 | Kristoffer Forslund, Daniel H. Huson, Vincent Moulton: VisRD--visual recombination detection. Bioinformatics 20(18): 3654-3655 (2004) | |
23 | Andreas W. M. Dress, Daniel H. Huson: Constructing Splits Graphs. IEEE/ACM Trans. Comput. Biology Bioinform. 1(3): 109-115 (2004) | |
22 | Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel: Phylogenetic Super-Networks from Partial Trees. IEEE/ACM Trans. Comput. Biology Bioinform. 1(4): 151-158 (2004) | |
2003 | ||
21 | Olaf Delgado Friedrichs, Tobias Dezulian, Daniel H. Huson: A meta-viewer for biomolecular data. GI Jahrestagung (1) 2003: 375-380 | |
20 | David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe: Distance Corrections on Recombinant Sequences. WABI 2003: 271-286 | |
2002 | ||
19 | Aaron L. Halpern, Daniel H. Huson, Knut Reinert: Segment Match Refinement and Applications. WABI 2002: 126-139 | |
18 | Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002) | |
2001 | ||
17 | Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18 | |
16 | Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139 | |
15 | Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163 | |
14 | Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306 | |
2000 | ||
13 | Vineet Bafna, Daniel H. Huson: The Conserved Exon Method for Gene Finding. ISMB 2000: 3-12 | |
12 | Olaf Delgado Friedrichs, Daniel H. Huson: 4-Regular Vertex-Transitive Tilings of E3. Discrete & Computational Geometry 24(2-3): 279-292 (2000) | |
1999 | ||
11 | Daniel H. Huson, Kelly Ann Smith, Tandy Warnow: Estimating Large Distances in Phylogenetic Reconstruction. Algorithm Engineering 1999: 272-286 | |
10 | Daniel H. Huson, Lisa Vawter, Tandy Warnow: Solving Large Scale Phylogenetic Problems using DCM2. ISMB 1999: 118-129 | |
9 | Daniel H. Huson, Scott Nettles, Tandy Warnow: Obtaining highly accurate topology estimates of evolutionary trees from very short sequences. RECOMB 1999: 198-207 | |
8 | Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph: Hybrid Tree Reconstruction Methods. ACM Journal of Experimental Algorithmics 4: 5 (1999) | |
7 | Olaf Delgado Friedrichs, Daniel H. Huson: Tiling Space by Platonic Solids, I. Discrete & Computational Geometry 21(2): 299-315 (1999) | |
6 | Daniel H. Huson, Scott Nettles, Tandy Warnow: Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction. Journal of Computational Biology 6(3/4): (1999) | |
1998 | ||
5 | Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph: Hybrid Tree Reconstruction Methods. Algorithm Engineering 1998: 179-192 | |
4 | Daniel H. Huson: SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14(1): 68-73 (1998) | |
3 | Nikolai P. Dolbilin, Andreas W. M. Dress, Daniel H. Huson: Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space. Discrete & Computational Geometry 20(2): 143-153 (1998) | |
1996 | ||
2 | Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton: Analyzing and Visualizing Sequence and Distance Data Using SplitsTree. Discrete Applied Mathematics 71(1-3): 95-109 (1996) | |
1992 | ||
1 | Reinhard Franz, Daniel H. Huson: The Classification of Quasi-Regular Polyhedra of Genus 2. Discrete & Computational Geometry 7: 347-357 (1992) |