Knut Reinert

	2009
46		Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218
45		Ole Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger: Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments. BioData Mining 2: (2009)
44		Tobias Rausch, Sergey Koren, Gennady Denisov, David Weese, Anne-Katrin Emde, Andreas Döring, Knut Reinert: A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics 25(9): 1118-1124 (2009)
	2008
43		Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert: Segment-based multiple sequence alignment. ECCB 2008: 187-192
42		Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron: Fast and Adaptive Variable Order Markov Chain Construction. WABI 2008: 306-317
41		Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert: LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. BMC Bioinformatics 9: (2008)
40		Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher: OpenMS - An open-source software framework for mass spectrometry. BMC Bioinformatics 9: (2008)
39		Tobias Rausch, Anne-Katrin Emde, Knut Reinert: Robust consensus computation. BMC Bioinformatics 9(S-10): (2008)
38		Andreas Döring, David Weese, Tobias Rausch, Knut Reinert: SeqAn An efficient, generic C++ library for sequence analysis. BMC Bioinformatics 9: (2008)
37		Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert: Computational Quantification of Peptides from LC-MS Data. Journal of Computational Biology 15(7): 685-704 (2008)
	2007
36		Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29
35		Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber, Knut Reinert: A geometric approach for the alignment of liquid chromatography - mass spectrometry data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 273-281
34		Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert: A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB 2007: 473-487
33		Markus Bauer, Gunnar W. Klau, Knut Reinert: Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics 8: (2007)
32		Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm: TOPP - the OpenMS proteomics pipeline. Bioinformatics 23(2): 191-197 (2007)
31		Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007)
	2006
30		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: Computational Proteomics, 20.-25. November 2005 Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006
29		Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt: High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254
28		Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: A branch-and-cut algorithm for multiple sequence alignment. Math. Program. 105(2-3): 387-425 (2006)
	2005
27		Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein: Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. CompLife 2005: 151-162
26		Markus Bauer, Gunnar W. Klau, Knut Reinert: Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. CompLife 2005: 217-228
25		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Abstract Collection - Computational Proteomics. Computational Proteomics 2005
24		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Executive Summary - Computational Proteomics. Computational Proteomics 2005
23		Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber: Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. Computational Proteomics 2005
22		Markus Bauer, Gunnar W. Klau, Knut Reinert: Multiple Structural RNA Alignment with Lagrangian Relaxation. WABI 2005: 303-314
21		Witold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert: Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants. BMC Bioinformatics 6: 203 (2005)
20		Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6: 285 (2005)
	2004
19		Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193
18		Oliver Kohlbacher, Knut Reinert: Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). it - Information Technology 46(1): 31-38 (2004)
	2002
17		Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. ECCB 2002: 4-16
16		Aaron L. Halpern, Daniel H. Huson, Knut Reinert: Segment Match Refinement and Applications. WABI 2002: 126-139
15		Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for contig scaffolding. J. ACM 49(5): 603-615 (2002)
	2001
14		Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18
13		Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139
12		Daniel H. Huson, Knut Reinert, Eugene W. Myers: The greedy path-merging algorithm for sequence assembly. RECOMB 2001: 157-163
11		Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306
	2000
10		Knut Reinert, Jens Stoye, Torsten Will: An iterative method for faster sum-of-pairs multiple sequence alignment. Bioinformatics 16(9): 808-814 (2000)
9		John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron: A polyhedral approach to sequence alignment problems. Discrete Applied Mathematics 104(1-3): 143-186 (2000)
8		Martin Lermen, Knut Reinert: The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment. Journal of Computational Biology 7(5): 655-671 (2000)
	1999
7		Knut Reinert, Jens Stoye, Torsten Will: Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. German Conference on Bioinformatics 1999: 17-24
6		Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)
	1998
5		Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998
4		Hans-Peter Lenhof, Knut Reinert, Martin Vingron: A polyhedral approach to RNA sequence structure alignment. RECOMB 1998: 153-162
3		Hans-Peter Lenhof, Knut Reinert, Martin Vingron: A Polyhedral Approach to RNA Sequence Structure Alignment. Journal of Computational Biology 5(3): 517-530 (1998)
	1997
2		Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu: A branch-and-cut algorithm for multiple sequence alignment. RECOMB 1997: 241-250
	1996
1		Phillip G. Bradford, Knut Reinert: Lower Bounds for Row Minima Searching (Extended Abstract). ICALP 1996: 454-465

Coauthor Index

1	Ernst Althaus	[17] [28] [46]
2	Markus Bauer	[22] [26] [33] [36]
3	Andreas Bertsch	[40]
4	Phillip G. Bradford	[1]
5	Alberto Caprara	[17] [28]
6	Kabir Chaturvedi	[14]
7	Arthur L. Delcher	[13]
8	Nathanaël Delmotte	[23]
9	Gennady Denisov	[44]
10	Ian M. Dew	[13]
11	Andreas Döring	[36] [38] [42] [43] [44]
12	Nathan Edwards	[14]
13	Anne-Katrin Emde	[39] [43] [44]
14	Daniel P. Fasulo	[14]
15	Michael Flanigan	[13]
16	Patrick Giavalisco	[20]
17	Johan Gobom	[20]
18	Clemens Gröpl	[27] [29] [32] [34] [35] [37] [40] [41]
19	Aaron L. Halpern	[11] [13] [14] [16] [36]
20	Ralf Herwig	[20]
21	Andreas Hildebrandt	[29] [34] [37] [40]
22	Christian G. Huber	[23] [24] [25] [27] [30] [35] [37]
23	Daniel H. Huson	[11] [12] [13] [14] [15] [16]
24	Rene Hussong	[34] [37] [40]
25	Sorin Istrail	[14]
26	Peter Jungblut	[21]
27	John D. Kececioglu	[2] [9]
28	Gunnar W. Klau	[19] [22] [26] [31] [33] [36] [46]
29	Christoph L. Klein	[23] [27]
30	Oliver Kohlbacher	[14] [18] [23] [24] [25] [27] [29] [30] [32] [40] [41] [46]
31	Sergey Koren	[44]
32	Saul A. Kravitz	[13]
33	Zhongwu Lai	[11] [13]
34	Maciej Lalowski	[20] [21]
35	Eva Lange	[27] [29] [32] [35] [40]
36	Hans Lehrach	[20]
37	Andreas Leinenbach	[23] [35] [37]
38	Hans-Peter Lenhof	[2] [3] [4] [5] [6] [9] [17] [28] [46]
39	Martin Lermen	[8]
40	Egidijus Machtejevas	[45]
41	Peter Martus	[20]
42	Bettina M. Mayr	[23] [27]
43	Kurt Mehlhorn	[2] [9]
44	Jason R. Miller	[14]
45	Clark M. Mobarry	[13]
46	Burkhard Morgenstern	[5] [6]
47	Petra Mutzel	[2] [9]
48	Eugene W. Myers (Gene Myers)	[11] [12] [13] [15]
49	Cédric Notredame	[43]
50	Nico Pfeifer	[32] [40] [41]
51	Sven Rahmann	[19] [31]
52	Tobias Rausch	[38] [39] [42] [43] [44]
53	Karin A. Remington	[13] [14]
54	Alexander Schliep	[19] [31]
55	Hartmut Schlüter	[45]
56	Marcel H. Schulz	[42]
57	Ole Schulz-Trieglaff	[32] [34] [35] [37] [40] [41] [45]
58	Russell Schwartz	[14]
59	Albert Sickmann	[20]
60	Jens Stoye	[7] [10]
61	Marc Sturm	[27] [32] [40]
62	Granger G. Sutton	[11] [13]
63	Joachim Thiemann	[45]
64	Russell J. Turner	[14]
65	Klaus Unger	[45]
66	Martin Vingron	[3] [4] [9] [19] [31] [42]
67	Brian Walenz	[14]
68	David Weese	[38] [42] [43] [44]
69	Torsten Will	[7] [10]
70	Witold E. Wolski	[20] [21]
71	Shibu Yooseph	[14]
72	Alexandra Zerck	[40]

Colors in the list of coauthors