Oliver Kohlbacher

	2009
50		Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218
49		Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. Bioinformatics 25(16): 2126-2133 (2009)
48		Magdalena Feldhahn, Pierre Dönnes, Philipp Thiel, Oliver Kohlbacher: FRED - a framework for T-cell epitope detection. Bioinformatics 25(20): 2758-2759 (2009)
47		Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof: A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinformatics 25(21): 2787-2794 (2009)
46		Nora C. Toussaint, Oliver Kohlbacher: OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines. Nucleic Acids Research 37(Web-Server-Issue): 617-622 (2009)
	2008
45		Sebastian J. Schultheiß, Wolfgang Busch, Jan Lohmann, Oliver Kohlbacher, Gunnar Rätsch: KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. German Conference on Bioinformatics 2008: 158-167
44		Nico Pfeifer, Oliver Kohlbacher: Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles. WABI 2008: 210-221
43		Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof: GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics 9: (2008)
42		Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher, Knut Reinert: LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. BMC Bioinformatics 9: (2008)
41		Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher: OpenMS - An open-source software framework for mass spectrometry. BMC Bioinformatics 9: (2008)
40		Wiebke Timm, Alexandra Scherbart, Sebastian Böcker, Oliver Kohlbacher, Tim W. Nattkemper: Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9: (2008)
39		Torsten Blum, Oliver Kohlbacher: MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization. Bioinformatics 24(18): 2108-2109 (2008)
38		Torsten Blum, Oliver Kohlbacher: Using Atom Mapping Rules for an Improved Detection of Relevant Routes in Weighted Metabolic Networks. Journal of Computational Biology 15(6): 565-576 (2008)
37		Magdalena Feldhahn, Philipp Thiel, Mathias M. Schuler, Nina Hillen, Stefan Stevanovic, Hans-Georg Rammensee, Oliver Kohlbacher: EpiToolKit - a web server for computational immunomics. Nucleic Acids Research 36(Web-Server-Issue): 519-522 (2008)
	2007
36		Torsten Blum, Oliver Kohlbacher: Finding Relevant Biotransformation Routes in Weighted Metabolic Networks. German Conference on Bioinformatics 2007: 30-44
35		Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BNDB - The Biochemical Network Database. BMC Bioinformatics 8: (2007)
34		Nico Pfeifer, Andreas Leinenbach, Christian G. Huber, Oliver Kohlbacher: Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics. BMC Bioinformatics 8: (2007)
33		Hagit Shatkay, Annette Höglund, Scott Brady, Torsten Blum, Pierre Dönnes, Oliver Kohlbacher: SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. Bioinformatics 23(11): 1410-1417 (2007)
32		Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm: TOPP - the OpenMS proteomics pipeline. Bioinformatics 23(2): 191-197 (2007)
31		Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof: Electrostatic potentials of proteins in water: a structured continuum approach. Bioinformatics 23(2): 99-103 (2007)
	2006
30		Daniel H. Huson, Oliver Kohlbacher, Andrei N. Lupas, Kay Nieselt, Andreas Zell: German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany GI 2006
29		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: Computational Proteomics, 20.-25. November 2005 Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006
28		Annette Höglund, Torsten Blum, Scott Brady, Pierre Dönnes, John San Miguel, Matthew Rocheford, Oliver Kohlbacher, Hagit Shatkay: Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data . Pacific Symposium on Biocomputing 2006: 16-27
27		Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt: High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254
26		Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher: MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. Bioinformatics 22(10): 1158-1165 (2006)
25		Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher: BALLView: a tool for research and education in molecular modeling. Bioinformatics 22(3): 365-366 (2006)
24		Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BN++ - A Biological Information System. J. Integrative Bioinformatics 3(2): (2006)
23		Dirk Neumann, Oliver Kohlbacher, Christian Merkwirth, Thomas Lengauer: A Fully Computational Model for Predicting Percutaneous Drug Absorption. Journal of Chemical Information and Modeling 46(1): 424-429 (2006)
22		Andreas Kerzmann, Dirk Neumann, Oliver Kohlbacher: SLICK - Scoring and Energy Functions for Protein-Carbohydrate Interactions. Journal of Chemical Information and Modeling 46(4): 1635-1642 (2006)
21		Pierre Dönnes, Oliver Kohlbacher: SVMHC: a server for prediction of MHC-binding peptides. Nucleic Acids Research 34(Web-Server-Issue): 194-197 (2006)
	2005
20		Michael R. Berthold, Robert C. Glen, Kay Diederichs, Oliver Kohlbacher, Ingrid Fischer: Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings Springer 2005
19		Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein: Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. CompLife 2005: 151-162
18		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Abstract Collection - Computational Proteomics. Computational Proteomics 2005
17		Christian G. Huber, Oliver Kohlbacher, Knut Reinert: 05471 Executive Summary - Computational Proteomics. Computational Proteomics 2005
16		Marc Sturm, Sascha Quinten, Christian G. Huber, Oliver Kohlbacher: A machine learning approach for prediction of DNA and peptide retention times. Computational Proteomics 2005
15		Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber: Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. Computational Proteomics 2005
14		Eva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt: High-accuracy peak picking of proteomics data. Computational Proteomics 2005
13		Annette Höglund, Pierre Dönnes, Torsten Blum, Hans-Werner Adolph, Oliver Kohlbacher: Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localizations. German Conference on Bioinformatics 2005: 45-59
12		Jochen Supper, Pierre Dönnes, Oliver Kohlbacher: Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules. ICAPR (1) 2005: 446-453
	2004
11		Oliver Kohlbacher, Knut Reinert: Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). it - Information Technology 46(1): 31-38 (2004)
	2003
10		Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail: Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB 2003: 17-26
	2002
9		Marite Sirava, T. Schäfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof: BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. ECCB 2002: 219-230
8		Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A Combinatorial Approach to Protein Docking with Flexible Side Chains. Journal of Computational Biology 9(4): 597-612 (2002)
	2001
7		Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18
6		Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof: A NMR-spectra-based scoring function for protein docking. RECOMB 2001: 184-192
	2000
5		Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A combinatorial approach to protein docking with flexible side-chains. RECOMB 2000: 15-24
4		Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL). ACM Journal of Experimental Algorithmics 5: 16 (2000)
3		Oliver Kohlbacher, Hans-Peter Lenhof: BALL-rapid software prototyping in computational molecular biology. Bioinformatics 16(9): 815-824 (2000)
	1999
2		Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: BALL: Biochemical Algorithms Library. Algorithm Engineering 1999: 331-345
1		Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Computational Molecular Biology. German Conference on Bioinformatics 1999: 81-92

Coauthor Index

1	Hans-Werner Adolph	[13] [26]
2	Maher Al-Awadhi	[43]
3	Ernst Althaus	[5] [8] [50]
4	Christina Backes	[24] [35] [43] [47]
5	Peter Bayer	[6]
6	Michael R. Berthold	[20]
7	Andreas Bertsch	[41]
8	Ralf Blossey	[31]
9	Torsten Blum	[13] [24] [26] [28] [33] [35] [36] [38] [39]
10	Sebastian Böcker	[40]
11	Nicolas Boghossian	[2] [4]
12	Erich Bornberg-Bauer	[9]
13	Scott Brady	[28] [33]
14	Andreas Burchardt	[6]
15	Wolfgang Busch	[45] [49]
16	Kabir Chaturvedi	[7]
17	Nathanaël Delmotte	[15]
18	Kay Diederichs	[20]
19	Pierre Dönnes	[12] [13] [21] [26] [28] [33] [48]
20	Nathan Edwards	[7]
21	Markus Eiglsperger	[9]
22	Daniel P. Fasulo	[7]
23	Magdalena Feldhahn	[37] [48]
24	Ingrid Fischer	[20]
25	Liliana Florea	[10]
26	Andreas Gerasch	[24] [35] [43] [47]
27	Robert C. Glen	[20]
28	Clemens Gröpl	[14] [19] [27] [32] [41] [42]
29	Bjarni V. Halldórsson	[10]
30	Aaron L. Halpern	[7]
31	Andreas Hildebrandt	[6] [14] [24] [25] [27] [31] [41]
32	Nina Hillen	[37]
33	Stephen Hoffman	[10]
34	Annette Höglund	[13] [26] [28] [33]
35	Christian G. Huber	[15] [16] [17] [18] [19] [29] [34]
36	Daniel H. Huson	[7] [30]
37	Rene Hussong	[41]
38	Sorin Istrail	[7] [10]
39	Michael Kaufmann	[9] [24] [35] [43] [47]
40	Andreas Keller	[43] [47]
41	Andreas Kerzmann	[22]
42	Gunnar W. Klau	[50]
43	Christoph L. Klein	[15] [19]
44	Jan Küntzer	[24] [35] [43]
45	Eva Lange	[14] [19] [27] [32] [41]
46	Andreas Leinenbach	[15] [34]
47	Thomas Lengauer	[23]
48	Hans-Peter Lenhof	[1] [2] [3] [4] [5] [6] [8] [9] [24] [25] [31] [35] [43] [47] [50]
49	Jan Lohmann	[45] [49]
50	Andrei N. Lupas	[30]
51	Bettina M. Mayr	[15] [19]
52	Eckart Meese	[47]
53	Christian Merkwirth	[23]
54	John San Miguel	[28]
55	Jason R. Miller	[7]
56	Andreas Moll	[6] [25]
57	Peter Müller	[5] [8]
58	Tim W. Nattkemper	[40]
59	Dirk Neumann	[22] [23]
60	Kay Nieselt	[30]
61	Nico Pfeifer	[32] [34] [41] [42] [44]
62	Sascha Quinten	[16]
63	Hans-Georg Rammensee	[37]
64	Gunnar Rätsch	[45] [49]
65	Knut Reinert	[7] [11] [15] [17] [18] [19] [27] [29] [32] [41] [42] [50]
66	Karin A. Remington	[7]
67	Sergej Rjasanow	[31]
68	Matthew Rocheford	[28]
69	T. Schäfer	[9]
70	Alexandra Scherbart	[40]
71	Mathias M. Schuler	[37]
72	Sebastian J. Schultheiß	[45] [49]
73	Ole Schulz-Trieglaff	[32] [41] [42]
74	Russell Schwartz	[7] [10]
75	Hagit Shatkay	[28] [33]
76	Marite Sirava	[9]
77	Stefan Stevanovic	[37]
78	Marc Sturm	[16] [19] [32] [41]
79	Jochen Supper	[12]
80	Philipp Thiel	[37] [48]
81	Wiebke Timm	[40]
82	Nora C. Toussaint	[46]
83	Russell J. Turner	[7]
84	Brian Walenz	[7]
85	Shibu Yooseph	[7]
86	Andreas Zell	[30]
87	Alexandra Zerck	[41]

Colors in the list of coauthors