 | 2009 |
|---|
| 96 |       | Marcel H. Schulz,
Sebastian Köhler,
Sebastian Bauer,
Martin Vingron,
Peter N. Robinson:
homepages/84/1721 journals/jiis/BarbanconM07 conf/fqas/BarbanconM04 conf/bibe/NakhlehMBPD03 conf/ideas/BarbanconM02 Exact Score Distribution Computation for Similarity Searches in Ontologies.
WABI 2009: 298-309 |
| 95 | | Ho-Ryun Chung,
Martin Vingron:
Comparison of sequence-dependent tiling array normalization approaches.
BMC Bioinformatics 10: (2009) |
| 94 | | Utz J. Pape,
Holger Klein,
Martin Vingron:
Statistical detection of cooperative transcription factors with similarity adjustment.
Bioinformatics 25(16): 2103-2109 (2009) |
| 93 | | Helge G. Roider,
Thomas Manke,
Sean O'Keeffe,
Martin Vingron,
Stefan A. Haas:
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Bioinformatics 25(4): 435-442 (2009) |
| 2008 |
|---|
| 92 |  | Martin Vingron,
Limsoon Wong:
Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings
Springer 2008 |
| 91 | | Utz J. Pape,
Holger Klein,
Martin Vingron:
Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment.
German Conference on Bioinformatics 2008: 96-105 |
| 90 | | Marcel H. Schulz,
David Weese,
Tobias Rausch,
Andreas Döring,
Knut Reinert,
Martin Vingron:
Fast and Adaptive Variable Order Markov Chain Construction.
WABI 2008: 306-317 |
| 89 | | Ho-Joon Lee,
Thomas Manke,
Ricardo Bringas,
Martin Vingron:
Prioritization of gene regulatory interactions from large-scale modules in yeast.
BMC Bioinformatics 9: (2008) |
| 88 | | Sebastian Bauer,
Steffen Grossmann,
Martin Vingron,
Peter N. Robinson:
Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration.
Bioinformatics 24(14): 1650-1651 (2008) |
| 87 | | Utz J. Pape,
Sven Rahmann,
Martin Vingron:
Natural similarity measures between position frequency matrices with an application to clustering.
Bioinformatics 24(3): 350-357 (2008) |
| 86 | | Robert Giegerich,
Alvis Brazma,
Inge Jonassen,
Esko Ukkonen,
Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education.
Briefings in Bioinformatics 9(3): 250-253 (2008) |
| 85 | | Utz J. Pape,
Sven Rahmann,
Fengzhu Sun,
Martin Vingron:
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands.
Journal of Computational Biology 15(6): 547-564 (2008) |
| 2007 |
|---|
| 84 | | Claudia Falter,
Alexander Schliep,
Joachim Selbig,
Martin Vingron,
Dirk Walther:
Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany.
GI 2007 |
| 83 | | Ho-Ryun Chung,
Dennis Kostka,
Martin Vingron:
A physical model for tiling array analysis.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 80-86 |
| 82 | | Peter F. Arndt,
Martin Vingron:
The Otto Warburg International Summer School and Workshop on Networks and Regulation.
BMC Bioinformatics 8(S-6): (2007) |
| 81 | | Helge G. Roider,
Aditi Kanhere,
Thomas Manke,
Martin Vingron:
Predicting transcription factor affinities to DNA from a biophysical model.
Bioinformatics 23(2): 134-141 (2007) |
| 80 | | Abha Singh Bais,
Steffen Grossmann,
Martin Vingron:
Simultaneous alignment and annotation of cis-regulatory regions.
Bioinformatics 23(2): 44-49 (2007) |
| 79 | | Steffen Grossmann,
Sebastian Bauer,
Peter N. Robinson,
Martin Vingron:
Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis.
Bioinformatics 23(22): 3024-3031 (2007) |
| 78 | | Gunnar W. Klau,
Sven Rahmann,
Alexander Schliep,
Martin Vingron,
Knut Reinert:
Integer linear programming approaches for non-unique probe selection.
Discrete Applied Mathematics 155(6-7): 840-856 (2007) |
| 77 | | Philipp W. Messer,
Ralf Bundschuh,
Martin Vingron,
Peter F. Arndt:
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics.
Journal of Computational Biology 14(5): 655-668 (2007) |
| 76 | | Christoph Dieterich,
M. W. Franz,
Martin Vingron:
Developments in CORG: a gene-centric comparative genomics resource.
Nucleic Acids Research 35(Database-Issue): 32-35 (2007) |
| 2006 |
|---|
| 75 | | Jacek Blazewicz,
Johann Christoph Freytag,
Martin Vingron:
Managing and Mining Genome Information: Frontiers in Bioinformatics, 30. October - 4. November 2005
Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006 |
| 74 | | Behshad Behzadi,
Martin Vingron:
An Improved Algorithm for the Macro-evolutionary Phylogeny Problem.
CPM 2006: 177-187 |
| 73 | | Behshad Behzadi,
Martin Vingron:
Reconstructing Domain Compositions of Ancestral Multi-domain Proteins.
Comparative Genomics 2006: 1-10 |
| 72 | | Philipp W. Messer,
Ralf Bundschuh,
Martin Vingron,
Peter F. Arndt:
Alignment Statistics for Long-Range Correlated Genomic Sequences.
RECOMB 2006: 426-440 |
| 71 | | Steffen Grossmann,
Sebastian Bauer,
Peter N. Robinson,
Martin Vingron:
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets.
RECOMB 2006: 85-98 |
| 70 | | Chen-Hsiang Yeang,
Martin Vingron:
A joint model of regulatory and metabolic networks.
BMC Bioinformatics 7: 332 (2006) |
| 69 | | Hannes Luz,
Martin Vingron:
Family specific rates of protein evolution.
Bioinformatics 22(10): 1166-1171 (2006) |
| 68 | | Christine Steinhoff,
Martin Vingron:
Normalization and quantification of differential expression in gene expression microarrays.
Briefings in Bioinformatics 7(2): 166-177 (2006) |
| 2005 |
|---|
| 67 | | Hannes Luz,
Martin Vingron:
Familz specific rates of protein evolution.
German Conference on Bioinformatics 2005: 133-144 |
| 66 | | Jacek Blazewicz,
Johann Christoph Freytag,
Martin Vingron:
05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Managing and Mining Genome Information 2005 |
| 65 | | Jacek Blazewicz,
Johann Christoph Freytag,
Martin Vingron:
05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics.
Managing and Mining Genome Information 2005 |
| 64 | | Antje Krause,
Jens Stoye,
Martin Vingron:
Large scale hierarchical clustering of protein sequences.
BMC Bioinformatics 6: 15 (2005) |
| 63 | | Morris Michael,
Christoph Dieterich,
Martin Vingron:
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors.
Bioinformatics 21(9): 2093-2094 (2005) |
| 62 | | Thomas Meinel,
Antje Krause,
Hannes Luz,
Martin Vingron,
Eike Staub:
The SYSTERS Protein Family Database in 2005.
Nucleic Acids Research 33(Database-Issue): 226-229 (2005) |
| 61 | | Stefan Roepcke,
Petko Fiziev,
P. H. Seeburg,
Martin Vingron:
SVC: structured visualization of evolutionary sequence conservation.
Nucleic Acids Research 33(Web-Server-Issue): 271-273 (2005) |
| 60 | | Stefan Roepcke,
Steffen Grossmann,
Sven Rahmann,
Martin Vingron:
T-Reg Comparator: an analysis tool for the comparison of position weight matrices.
Nucleic Acids Research 33(Web-Server-Issue): 438-441 (2005) |
| 59 | | Shobhit Gupta,
Martin Vingron,
Stefan A. Haas:
T-STAG: resource and web-interface for tissue-specific transcripts and genes.
Nucleic Acids Research 33(Web-Server-Issue): 654-658 (2005) |
| 2004 |
|---|
| 58 | | Christoph Dieterich,
Sven Rahmann,
Martin Vingron:
Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 109-115 |
| 57 | | Gunnar W. Klau,
Sven Rahmann,
Alexander Schliep,
Martin Vingron,
Knut Reinert:
Optimal robust non-unique probe selection using Integer Linear Programming.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193 |
| 56 | | Thomas Manke,
Christoph Dieterich,
Martin Vingron:
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.
Regulatory Genomics 2004: 14-21 |
| 55 | | Shobhit Gupta,
Dorothea Zink,
Bernhard Korn,
Martin Vingron,
Stefan A. Haas:
Genome wide identification and classification of alternative splicing based on EST data.
Bioinformatics 20(16): 2579-2585 (2004) |
| 54 | | Torsten Crass,
Iris Antes,
Rico Basekow,
Peer Bork,
Christian Buning,
Maik Christensen,
Holger Claussen,
Christian Ebeling,
Peter Ernst,
Valérie Gailus-Durner,
Karl-Heinz Glatting,
Rolf Gohla,
Frank Gößling,
Korbinian Grote,
Karsten R. Heidtke,
Alexander Herrmann,
Sean O'Keeffe,
O. Kießlich,
Sven Kolibal,
Jan O. Korbel,
Thomas Lengauer,
Ines Liebich,
Mark van der Linden,
Hannes Luz,
Kathrin Meissner,
Christian von Mering,
Heinz-Theodor Mevissen,
Hans-Werner Mewes,
Holger Michael,
Martin Mokrejs,
Tobias Müller,
Heike Pospisil,
Matthias Rarey,
Jens G. Reich,
Ralf Schneider,
Dietmar Schomburg,
Steffen Schulze-Kremer,
Knut Schwarzer,
Ingolf Sommer,
Stephan Springstubbe,
Sándor Suhai,
Gnanasekaran Thoppae,
Martin Vingron,
Jens Warfsmann,
Thomas Werner,
Daniel Wetzler,
Edgar Wingender,
Ralf Zimmer:
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinformatics 20(2): 268-270 (2004) |
| 53 | | Katja Rateitschak,
Tobias Müller,
Martin Vingron:
Annotating significant pairs of transcription factor binding sites in regulatory DNA.
In Silico Biology 4: (2004) |
| 52 | | Henning Hermjakob,
Luisa Montecchi-Palazzi,
Chris Lewington,
Sugath Mudali,
Samuel Kerrien,
Sandra E. Orchard,
Martin Vingron,
Bernd Roechert,
Peter Roepstorff,
Alfonso Valencia,
Hanah Margalit,
John Armstrong,
Amos Bairoch,
Gianni Cesareni,
David James Sherman,
Rolf Apweiler:
IntAct: an open source molecular interaction database.
Nucleic Acids Research 32(Database-Issue): 452-455 (2004) |
| 51 | | Anja von Heydebreck,
Silke Sperling,
Bogac Kaynak,
Hans Lehrach,
Martin Vingron:
Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays).
it - Information Technology 46(1): 26-30 (2004) |
| 2003 |
|---|
| 50 | | Christoph Dieterich,
Ralf Herwig,
Martin Vingron:
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
ECCB 2003: 50-56 |
| 49 | | Thomas Meinel,
Martin Vingron,
Antje Krause:
The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies.
German Conference on Bioinformatics 2003: 103-108 |
| 48 | | Christine Steinhoff,
Tobias Müller,
Ulrike A. Nuber,
Martin Vingron:
Gaussian Mixture Density Estimation Applied to Microarray Data.
IDA 2003: 418-429 |
| 47 | | Benno Schwikowski,
Martin Vingron:
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions.
Discrete Applied Mathematics 127(1): 95-117 (2003) |
| 46 | | Heiko A. Schmidt,
Ekkehard Petzold,
Martin Vingron,
Arndt von Haeseler:
Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.
J. Parallel Distrib. Comput. 63(7-8): 719-727 (2003) |
| 45 | | Christoph Dieterich,
Haiyan Wang,
Katja Rateitschak,
Hannes Luz,
Martin Vingron:
CORG: a database for COmparative Regulatory Genomics.
Nucleic Acids Research 31(1): 55-57 (2003) |
| 2002 |
|---|
| 44 | | Pierre Nicodème,
T. Doerks,
Martin Vingron:
Proteome analysis based on motif statistics.
ECCB 2002: 161-171 |
| 43 | | Stéphanie Boué,
Martin Vingron,
Evgenia V. Kriventseva,
Ina Koch:
Theoretical analysis of alternative splice forms using computational methods.
ECCB 2002: 65-73 |
| 42 | | Christoph Dieterich,
Brian Cusack,
Haiyan Wang,
Katja Rateitschak,
Antje Krause,
Martin Vingron:
Annotating regulatory DNA based on man-mouse genomic comparison.
ECCB 2002: 84-90 |
| 41 | | Wolfgang Huber,
Anja von Heydebreck,
Holger Sültmann,
Annemarie Poustka,
Martin Vingron:
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
ISMB 2002: 96-104 |
| 40 | | Kurt Fellenberg,
Nicole C. Hauser,
Benedikt Brors,
Jörg D. Hoheisel,
Martin Vingron:
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
Bioinformatics 18(3): 423-433 (2002) |
| 39 | | Heiko A. Schmidt,
Korbinian Strimmer,
Martin Vingron,
Arndt von Haeseler:
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
Bioinformatics 18(3): 502-504 (2002) |
| 38 | | Dietmar Schomburg,
Martin Vingron:
Bioinformatics research and education in Germany.
In Silico Biology 2: 15 (2002) |
| 37 | | Antje Krause,
Stefan A. Haas,
Eivind Coward,
Martin Vingron:
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.
Nucleic Acids Research 30(1): 299-300 (2002) |
| 2001 |
|---|
| 36 | | Anja von Heydebreck,
Wolfgang Huber,
Annemarie Poustka,
Martin Vingron:
Identifying splits with clear separation: a new class discovery method for gene expression data.
ISMB (Supplement of Bioinformatics) 2001: 107-114 |
| 35 | | Rainer Spang,
Martin Vingron:
Limits of homology detection by pairwise sequence comparison.
Bioinformatics 17(4): 338-342 (2001) |
| 34 | | Martin Vingron:
Bioinformatics needs to adopt statistical thinking - Editorial.
Bioinformatics 17(5): 389-390 (2001) |
| 2000 |
|---|
| 33 | | Richard Desper,
Martin Vingron:
Tree fitting: an algebraic approach using profile distances.
RECOMB 2000: 119-126 |
| 32 | | Steffen Heber,
Jens Stoye,
Jörg D. Hoheisel,
Martin Vingron:
Contig selection in physical mapping.
RECOMB 2000: 155-164 |
| 31 | | Tim Beißbarth,
Kurt Fellenberg,
Benedikt Brors,
R. Arribas-Prat,
J. M. Boer,
Nicole C. Hauser,
Marcel Scheideler,
Jörg D. Hoheisel,
G. Schütz,
Annemarie Poustka,
Martin Vingron:
Processing and quality control of DNA array hybridization data.
Bioinformatics 16(11): 1014-1022 (2000) |
| 30 | | John D. Kececioglu,
Hans-Peter Lenhof,
Kurt Mehlhorn,
Petra Mutzel,
Knut Reinert,
Martin Vingron:
A polyhedral approach to sequence alignment problems.
Discrete Applied Mathematics 104(1-3): 143-186 (2000) |
| 29 | | Steffen Heber,
Jens Stoye,
Marcus Frohme,
Jörg D. Hoheisel,
Martin Vingron:
Contig Selection in Physical Mapping.
Journal of Computational Biology 7(3-4): 395-408 (2000) |
| 28 | | Tobias Müller,
Martin Vingron:
Modeling Amino Acid Replacement.
Journal of Computational Biology 7(6): 761-776 (2000) |
| 27 | | Nicolas Pollet,
Heiko A. Schmidt,
Volker Gawantka,
Martin Vingron,
Christof Niehrs:
Axeldb: a Xenopus laevis database focusing on gene expression.
Nucleic Acids Research 28(1): 139-140 (2000) |
| 26 | | Antje Krause,
Jens Stoye,
Martin Vingron:
The SYSTERS protein sequence cluster set.
Nucleic Acids Research 28(1): 270-272 (2000) |
| 1999 |
|---|
| 25 | | Tobias Müller,
Rainer Spang,
Martin Vingron:
A new method for modeling protein evolution.
German Conference on Bioinformatics 1999: 2-8 |
| 24 | | Marc Rehmsmeier,
Martin Vingron:
Phylogeny meets sequence search.
German Conference on Bioinformatics 1999: 66-72 |
| 23 | | Stefan Burkhardt,
Andreas Crauser,
Paolo Ferragina,
Hans-Peter Lenhof,
Eric Rivals,
Martin Vingron:
q-gram based database searching using a suffix array (QUASAR).
RECOMB 1999: 77-83 |
| 22 | | Antje Krause,
Pierre Nicodème,
Erich Bornberg-Bauer,
Marc Rehmsmeier,
Martin Vingron:
WWW access to the SYSTERS protein sequence cluster set.
Bioinformatics 15(3): 262-263 (1999) |
| 1998 |
|---|
| 21 | | Antje Krause,
Pierre Nicodème,
Marc Rehmsmeier,
Martin Vingron:
Automatic clustering of large sequence databases.
German Conference on Bioinformatics 1998 |
| 20 | | Heiko A. Schmidt,
Martin Vingron:
pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis.
German Conference on Bioinformatics 1998 |
| 19 | | Martin Vingron:
Alignment and Phylogeny Construction for Biological Sequences.
IFIP Congress: Fundamentals - Foundations of Computer Science 1998: 27-30 |
| 18 | | Hans-Peter Lenhof,
Knut Reinert,
Martin Vingron:
A polyhedral approach to RNA sequence structure alignment.
RECOMB 1998: 153-162 |
| 17 | | Rainer Spang,
Martin Vingron:
Statistics of large-scale sequence searching.
Bioinformatics 14(3): 279-284 (1998) |
| 16 | | Yan P. Yuan,
Oliver Eulenstein,
Martin Vingron,
Peer Bork:
Towards detection of orthologues in sequence databases.
Bioinformatics 14(3): 285-289 (1998) |
| 15 | | Antje Krause,
Martin Vingron:
A set-theoretic approach to database searching and clustering.
Bioinformatics 14(5): 430-438 (1998) |
| 14 | | Oliver Eulenstein,
Martin Vingron:
On the Equivalence of Two Tree Mapping Measures.
Discrete Applied Mathematics 88(1-3): 103-128 (1998) |
| 13 | | Oliver Eulenstein,
Boris Mirkin,
Martin Vingron:
Duplication-Based Measures of Difference Between Gene and Species Trees.
Journal of Computational Biology 5(1): 135-148 (1998) |
| 12 | | Hans-Peter Lenhof,
Knut Reinert,
Martin Vingron:
A Polyhedral Approach to RNA Sequence Structure Alignment.
Journal of Computational Biology 5(3): 517-530 (1998) |
| 1997 |
|---|
| 11 | | Yan P. Yuan,
Oliver Eulenstein,
Martin Vingron,
Peer Bork:
Towards detection of sequence orthologs.
German Conference on Bioinformatics 1997: 25-30 |
| 10 | | Rainer Spang,
Martin Vingron:
Statistics of large scale sequence searching.
German Conference on Bioinformatics 1997: 33-35 |
| 9 | | Benno Schwikowski,
Martin Vingron:
The deferred path heuristic for the generalized tree alignment problem.
RECOMB 1997: 257-266 |
| 8 | | Martin Vingron,
Arndt von Haeseler:
Towards Integration of Multiple Alignment and Phylogenetic Tree Construction.
Journal of Computational Biology 4(1): 23-34 (1997) |
| 7 | | Benno Schwikowski,
Martin Vingron:
The Deferred Path Heuristic for the Generalized Tree Alignment Problem.
Journal of Computational Biology 4(3): 415-431 (1997) |
| 1996 |
|---|
| 6 | | Benno Schwikowski,
Martin Vingron:
Attacking Generalized tree Alignment by a Deferred Path Heuristic.
German Conference on Bioinformatics 1996: 302-304 |
| 5 | | Benno Schwikowski,
Martin Vingron:
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats.
German Conference on Bioinformatics - Selected Papers 1996: 115-124 |
| 4 | | Martin Vingron,
Michael S. Waterman:
Alignment Networks and Electrical Networks.
Discrete Applied Mathematics 71(1-3): 297-309 (1996) |
| 1993 |
|---|
| 3 | | Martin Vingron,
Pavel A. Pevzner:
Multiple Sequence Comparison and n-Dimensional Image Reconstruction.
CPM 1993: 243-253 |
| 1989 |
|---|
| 2 | | R. Rechid,
Martin Vingron,
P. Argos:
A new interactive protein sequence alignment program and comparison of its results with widely used algorithms.
Computer Applications in the Biosciences 5(2): 107-113 (1989) |
| 1 | | Martin Vingron,
P. Argos:
A fast and sensitive multiple sequence alignment algorithm.
Computer Applications in the Biosciences 5(2): 115-121 (1989) |
